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IGVFDS1879IAKX

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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 53.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX3-SC2_snATAC

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
R2
384
Barcode index
3.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
388
Read 1
6.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
384
Read 1
6.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
388
1.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
387
Read 2
6.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
387
Barcode index
3.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
388
Barcode index
3.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
384
1.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
386
Read 1
6.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
385
1.4 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 53.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_164
male
Homo sapiens
  • jimmie-ye:donor_232
female
Homo sapiens
  • jimmie-ye:donor_223
female
Homo sapiens
  • jimmie-ye:donor_31
female
Homo sapiens
  • jimmie-ye:donor_48
female
Homo sapiens
  • jimmie-ye:donor_46
male
Homo sapiens
  • jimmie-ye:donor_316
female
Homo sapiens
  • jimmie-ye:donor_32
female
Homo sapiens
  • jimmie-ye:donor_245
female
Homo sapiens
  • jimmie-ye:donor_273
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX3-SC2_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF