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INDEXED
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MeasurementSet
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IGVFDS1873QGHK
IGVFDS1873QGHK
released
Json view
File Set Type
experimental data
Summary
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
Assay Term
Hi-C assay
Sample Summaries
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
Construct Library Sets
IGVFDS8122GWMC
guide (sgRNA) library targeting accessible genome regions in a genomic locus
Protocols
https://www.protocols.io/view/hicar-for-mouse-hl-1-cells-following-enhancer-pert-36wgqn2yygk5
Aliases
charles-gersbach:measurement-set-crispra-region3-mouse-hl1-targeted-hicar-rep3
Sequencing Results (Illumina)
2 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0417PVXJ
fastq
reads
R1
4
Illumina NextSeq 2000
983 MB
Charles Gersbach, Duke
validated
IGVFFI3699PKGX
fastq
reads
R2
4
Illumina NextSeq 2000
1.1 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM5017HPIL
InVitroSystem
HL-1
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1434JYIN
charles-gersbach:mouse-donor-HL-1
female
Mus musculus
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7268XYPD
AnalysisSet
HiCAR: contact matrix
charles-gersbach:analysis-set-crispra-region3-mouse-hl1-targeted-hicar-rep3-cool
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke