{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1873JMKU",
"aliases": [
"bradley-bernstein:scRNA Lib 30",
"buenrostro-bernstein:scRNA Lib 30"
],
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"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM7298SRFZ](/primary-cells/IGVFSM7298SRFZ/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM7298SRFZ/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1873JMKU](/measurement-sets/IGVFDS1873JMKU/) has sequence file(s): [IGVFFI2579QQOT](/sequence-files/IGVFFI2579QQOT/), [IGVFFI9382BRAQ](/sequence-files/IGVFFI9382BRAQ/), [IGVFFI1833MVDZ](/sequence-files/IGVFFI1833MVDZ/), [IGVFFI1166IUTD](/sequence-files/IGVFFI1166IUTD/), [IGVFFI4377LTOC](/sequence-files/IGVFFI4377LTOC/), [IGVFFI1399KNJN](/sequence-files/IGVFFI1399KNJN/), [IGVFFI9476RNNX](/sequence-files/IGVFFI9476RNNX/), [IGVFFI2869FZTT](/sequence-files/IGVFFI2869FZTT/), [IGVFFI9595DGPA](/sequence-files/IGVFFI9595DGPA/), [IGVFFI2823GZHC](/sequence-files/IGVFFI2823GZHC/), [IGVFFI3228WKVB](/sequence-files/IGVFFI3228WKVB/), [IGVFFI6526HZSL](/sequence-files/IGVFFI6526HZSL/), [IGVFFI5176TESK](/sequence-files/IGVFFI5176TESK/), [IGVFFI2269MOZC](/sequence-files/IGVFFI2269MOZC/), [IGVFFI1023PEZW](/sequence-files/IGVFFI1023PEZW/), [IGVFFI5662WYNV](/sequence-files/IGVFFI5662WYNV/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1873JMKU/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1873JMKU](/measurement-sets/IGVFDS1873JMKU/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1873JMKU/"
}
]
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7298SRFZ",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 5",
"buenrostro-bernstein:BioSam 4568_SS-PKR 5"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 5), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:20.149293+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "e9730423-325d-4cc1-b13a-a55d470db236"
}