{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1847PMGO/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1847PMGO",
"aliases": [
"bradley-bernstein:scATAC Lib 12",
"buenrostro-bernstein:scATAC Lib 12"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9496THJI](/primary-cells/IGVFSM9496THJI/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9496THJI/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1847PMGO](/measurement-sets/IGVFDS1847PMGO/) has sequence file(s): [IGVFFI1588UTCX](/sequence-files/IGVFFI1588UTCX/), [IGVFFI5920TVOB](/sequence-files/IGVFFI5920TVOB/), [IGVFFI1403DNJE](/sequence-files/IGVFFI1403DNJE/), [IGVFFI1656ZBDM](/sequence-files/IGVFFI1656ZBDM/), [IGVFFI9272UTVL](/sequence-files/IGVFFI9272UTVL/), [IGVFFI8304KTBF](/sequence-files/IGVFFI8304KTBF/), [IGVFFI1726NCSR](/sequence-files/IGVFFI1726NCSR/), [IGVFFI0430TLQA](/sequence-files/IGVFFI0430TLQA/), [IGVFFI1047LCMH](/sequence-files/IGVFFI1047LCMH/), [IGVFFI8876KKJB](/sequence-files/IGVFFI8876KKJB/), [IGVFFI5402BIWJ](/sequence-files/IGVFFI5402BIWJ/), [IGVFFI0101RUMP](/sequence-files/IGVFFI0101RUMP/), [IGVFFI7492PZYM](/sequence-files/IGVFFI7492PZYM/), [IGVFFI3071RWBS](/sequence-files/IGVFFI3071RWBS/), [IGVFFI9339AXYC](/sequence-files/IGVFFI9339AXYC/), [IGVFFI7531DOEF](/sequence-files/IGVFFI7531DOEF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1847PMGO/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1847PMGO](/measurement-sets/IGVFDS1847PMGO/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1847PMGO/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
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"buenrostro-bernstein:BioSam 4568_SS-PKR 2"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:04.223800+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "587f0247-5ece-4efa-b889-54c01ef0f254"
}