{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1828CQSR",
"aliases": [
"bradley-bernstein:scRNA Lib 12",
"buenrostro-bernstein:scRNA Lib 12"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1828CQSR](/measurement-sets/IGVFDS1828CQSR/) has sequence file(s): [IGVFFI7109MWBG](/sequence-files/IGVFFI7109MWBG/), [IGVFFI4489PMXU](/sequence-files/IGVFFI4489PMXU/), [IGVFFI9860GXOX](/sequence-files/IGVFFI9860GXOX/), [IGVFFI6736YHHG](/sequence-files/IGVFFI6736YHHG/), [IGVFFI0536MDHI](/sequence-files/IGVFFI0536MDHI/), [IGVFFI1147DBBC](/sequence-files/IGVFFI1147DBBC/), [IGVFFI3870JUEL](/sequence-files/IGVFFI3870JUEL/), [IGVFFI3752HTSU](/sequence-files/IGVFFI3752HTSU/), [IGVFFI5797VAVB](/sequence-files/IGVFFI5797VAVB/), [IGVFFI9660YDOD](/sequence-files/IGVFFI9660YDOD/), [IGVFFI2853FSEG](/sequence-files/IGVFFI2853FSEG/), [IGVFFI9317BFPY](/sequence-files/IGVFFI9317BFPY/), [IGVFFI8850LNRH](/sequence-files/IGVFFI8850LNRH/), [IGVFFI7441KEEL](/sequence-files/IGVFFI7441KEEL/), [IGVFFI6556MYSB](/sequence-files/IGVFFI6556MYSB/), [IGVFFI9277TQVE](/sequence-files/IGVFFI9277TQVE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1828CQSR/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9496THJI](/primary-cells/IGVFSM9496THJI/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9496THJI/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1828CQSR](/measurement-sets/IGVFDS1828CQSR/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1828CQSR/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"Item"
],
"accession": "IGVFSM9496THJI",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 2",
"buenrostro-bernstein:BioSam 4568_SS-PKR 2"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:07.251522+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "ebdc53d9-5a74-4ce1-94cb-560750051ccd"
}