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INDEXED
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MeasurementSet
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IGVFDS1816FCQL
IGVFDS1816FCQL
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 596
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1562DYER
fastq
reads
R2
3827
Read 2, Barcode index
IGVFFI2689KSCB
Illumina NovaSeq 6000
H22KKDRX5
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI3151GLAE
fastq
reads
R1
3827
Read 1
IGVFFI2689KSCB
Illumina NovaSeq 6000
H22KKDRX5
781 MB
Jason Buenrostro, Broad
validated
IGVFFI8294TYFC
fastq
reads
R1
3851
Read 1
IGVFFI5292TPOX
Illumina NovaSeq 6000
H22KKDRX5
800 MB
Jason Buenrostro, Broad
validated
IGVFFI8794VJYW
fastq
reads
R2
3851
Read 2, Barcode index
IGVFFI5292TPOX
Illumina NovaSeq 6000
H22KKDRX5
1.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2881UHTO
Tissue
brain
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9446AKYF
buenrostro-bernstein:Donor 2047
unspecified
Mus musculus
Related Multiome Datasets
4 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4653HFNR
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 1268
Jason Buenrostro, Broad
IGVFDS7938OXSK
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 609
Jason Buenrostro, Broad
IGVFDS8623UWKX
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 598
Jason Buenrostro, Broad
IGVFDS9866LFTQ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 597
Jason Buenrostro, Broad