IGVFDS1813UKUP

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS1813UKUP/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS1813UKUP",
10    "aliases": [
11        "ali-mortazavi:009_67A_illumina"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS1813UKUP](/measurement-sets/IGVFDS1813UKUP/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/measurement-sets/IGVFDS1813UKUP/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS1813UKUP](/measurement-sets/IGVFDS1813UKUP/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS1813UKUP/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS1813UKUP](/measurement-sets/IGVFDS1813UKUP/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS1813UKUP/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released multiplexed sample [IGVFSM9611AGDB](/multiplexed-samples/IGVFSM9611AGDB/) has in progress subobject tabular file [IGVFFI9994MHCA](/tabular-files/IGVFFI9994MHCA/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/multiplexed-samples/IGVFSM9611AGDB/"
54            },
55            {
56                "category": "missing publication",
57                "detail": "Multiplexed sample [IGVFSM9611AGDB](/multiplexed-samples/IGVFSM9611AGDB/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_sample_missing_publication",
61                "path": "/multiplexed-samples/IGVFSM9611AGDB/"
62            }
63        ]
64    },
65    "award": {
66        "@id": "/awards/HG012077/",
67        "component": "mapping",
68        "contact_pi": {
69            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
70            "title": "Ali Mortazavi"
71        },
72        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
73    },
74    "control_for": [],
75    "creation_timestamp": "2023-10-12T16:21:00.694496+00:00",
76    "data_use_limitation_summaries": [
77        "no certificate"
78    ],
79    "donors": [
80        {
81            "@id": "/rodent-donors/IGVFDO7062NBTQ/",
82            "accession": "IGVFDO7062NBTQ",
83            "aliases": [
84                "ali-mortazavi:079_PWKJ_10M"
85            ],
86            "sex": "male",
87            "status": "released",
88            "strain_background": "PWK/PhJ (PWK)",
89            "taxa": "Mus musculus"
90        },
91        {
92            "@id": "/rodent-donors/IGVFDO5177QEWF/",
93            "accession": "IGVFDO5177QEWF",
94            "aliases": [
95                "ali-mortazavi:063_WSBJ_10M"
96            ],
97            "sex": "male",
98            "status": "released",
99            "strain_background": "WSB/EiJ (WSB)",
100            "taxa": "Mus musculus"
101        },
102        {
103            "@id": "/rodent-donors/IGVFDO5183UZGS/",
104            "accession": "IGVFDO5183UZGS",
105            "aliases": [
106                "ali-mortazavi:021_B6J_10M"
107            ],
108            "sex": "male",
109            "status": "released",
110            "strain_background": "C57BL/6J (B6)",
111            "taxa": "Mus musculus"
112        },
113        {
114            "@id": "/rodent-donors/IGVFDO5539RLXJ/",
115            "accession": "IGVFDO5539RLXJ",
116            "aliases": [
117                "ali-mortazavi:029_AJ_10M"
118            ],
119            "sex": "male",
120            "status": "released",
121            "strain_background": "A/J (AJ)",
122            "taxa": "Mus musculus"
123        },
124        {
125            "@id": "/rodent-donors/IGVFDO4707SGWM/",
126            "accession": "IGVFDO4707SGWM",
127            "aliases": [
128                "ali-mortazavi:051_NZOJ_10M"
129            ],
130            "sex": "male",
131            "status": "released",
132            "strain_background": "NZO/H1LtJ (NZO)",
133            "taxa": "Mus musculus"
134        },
135        {
136            "@id": "/rodent-donors/IGVFDO5085MJSP/",
137            "accession": "IGVFDO5085MJSP",
138            "aliases": [
139                "ali-mortazavi:048_NZOJ_10F"
140            ],
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142            "status": "released",
143            "strain_background": "NZO/H1LtJ (NZO)",
144            "taxa": "Mus musculus"
145        },
146        {
147            "@id": "/rodent-donors/IGVFDO4725SNCJ/",
148            "accession": "IGVFDO4725SNCJ",
149            "aliases": [
150                "ali-mortazavi:017_B6J_10M"
151            ],
152            "sex": "male",
153            "status": "released",
154            "strain_background": "C57BL/6J (B6)",
155            "taxa": "Mus musculus"
156        },
157        {
158            "@id": "/rodent-donors/IGVFDO3534MDFF/",
159            "accession": "IGVFDO3534MDFF",
160            "aliases": [
161                "ali-mortazavi:046_NZOJ_10F"
162            ],
163            "sex": "female",
164            "status": "released",
165            "strain_background": "NZO/H1LtJ (NZO)",
166            "taxa": "Mus musculus"
167        },
168        {
169            "@id": "/rodent-donors/IGVFDO5872DFML/",
170            "accession": "IGVFDO5872DFML",
171            "aliases": [
172                "ali-mortazavi:094_CASTJ_10F"
173            ],
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175            "status": "released",
176            "strain_background": "CAST/EiJ (CAST)",
177            "taxa": "Mus musculus"
178        },
179        {
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181            "accession": "IGVFDO8152XDDC",
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183                "ali-mortazavi:090_CASTJ_10F"
184            ],
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186            "status": "released",
187            "strain_background": "CAST/EiJ (CAST)",
188            "taxa": "Mus musculus"
189        },
190        {
191            "@id": "/rodent-donors/IGVFDO2106EEWB/",
192            "accession": "IGVFDO2106EEWB",
193            "aliases": [
194                "ali-mortazavi:078_PWKJ_10F"
195            ],
196            "sex": "female",
197            "status": "released",
198            "strain_background": "PWK/PhJ (PWK)",
199            "taxa": "Mus musculus"
200        },
201        {
202            "@id": "/rodent-donors/IGVFDO5502NJPS/",
203            "accession": "IGVFDO5502NJPS",
204            "aliases": [
205                "ali-mortazavi:038_129S1J_10F"
206            ],
207            "sex": "female",
208            "status": "released",
209            "strain_background": "129S1/SvImJ (129)",
210            "taxa": "Mus musculus"
211        },
212        {
213            "@id": "/rodent-donors/IGVFDO7951JDSP/",
214            "accession": "IGVFDO7951JDSP",
215            "aliases": [
216                "ali-mortazavi:026_AJ_10F"
217            ],
218            "sex": "female",
219            "status": "released",
220            "strain_background": "A/J (AJ)",
221            "taxa": "Mus musculus"
222        },
223        {
224            "@id": "/rodent-donors/IGVFDO0681EHNP/",
225            "accession": "IGVFDO0681EHNP",
226            "aliases": [
227                "ali-mortazavi:052_NZOJ_10F"
228            ],
229            "sex": "female",
230            "status": "released",
231            "strain_background": "NZO/H1LtJ (NZO)",
232            "taxa": "Mus musculus"
233        },
234        {
235            "@id": "/rodent-donors/IGVFDO6112GRYR/",
236            "accession": "IGVFDO6112GRYR",
237            "aliases": [
238                "ali-mortazavi:059_WSBJ_10M"
239            ],
240            "sex": "male",
241            "status": "released",
242            "strain_background": "WSB/EiJ (WSB)",
243            "taxa": "Mus musculus"
244        },
245        {
246            "@id": "/rodent-donors/IGVFDO6219LVKW/",
247            "accession": "IGVFDO6219LVKW",
248            "aliases": [
249                "ali-mortazavi:032_AJ_10F"
250            ],
251            "sex": "female",
252            "status": "released",
253            "strain_background": "A/J (AJ)",
254            "taxa": "Mus musculus"
255        },
256        {
257            "@id": "/rodent-donors/IGVFDO9510ILZG/",
258            "accession": "IGVFDO9510ILZG",
259            "aliases": [
260                "ali-mortazavi:053_NZOJ_10M"
261            ],
262            "sex": "male",
263            "status": "released",
264            "strain_background": "NZO/H1LtJ (NZO)",
265            "taxa": "Mus musculus"
266        },
267        {
268            "@id": "/rodent-donors/IGVFDO0430HQIU/",
269            "accession": "IGVFDO0430HQIU",
270            "aliases": [
271                "ali-mortazavi:041_129S1J_10M"
272            ],
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274            "status": "released",
275            "strain_background": "129S1/SvImJ (129)",
276            "taxa": "Mus musculus"
277        },
278        {
279            "@id": "/rodent-donors/IGVFDO3436ZMLY/",
280            "accession": "IGVFDO3436ZMLY",
281            "aliases": [
282                "ali-mortazavi:091_CASTJ_10M"
283            ],
284            "sex": "male",
285            "status": "released",
286            "strain_background": "CAST/EiJ (CAST)",
287            "taxa": "Mus musculus"
288        },
289        {
290            "@id": "/rodent-donors/IGVFDO3640WUBU/",
291            "accession": "IGVFDO3640WUBU",
292            "aliases": [
293                "ali-mortazavi:066_NODJ_10F"
294            ],
295            "sex": "female",
296            "status": "released",
297            "strain_background": "NOD/ShiLtJ (NOD)",
298            "taxa": "Mus musculus"
299        },
300        {
301            "@id": "/rodent-donors/IGVFDO3662UKFW/",
302            "accession": "IGVFDO3662UKFW",
303            "aliases": [
304                "ali-mortazavi:087_CASTJ_10M"
305            ],
306            "sex": "male",
307            "status": "released",
308            "strain_background": "CAST/EiJ (CAST)",
309            "taxa": "Mus musculus"
310        },
311        {
312            "@id": "/rodent-donors/IGVFDO0026YRCR/",
313            "accession": "IGVFDO0026YRCR",
314            "aliases": [
315                "ali-mortazavi:018_B6J_10F"
316            ],
317            "sex": "female",
318            "status": "released",
319            "strain_background": "C57BL/6J (B6)",
320            "taxa": "Mus musculus"
321        },
322        {
323            "@id": "/rodent-donors/IGVFDO9142EUBJ/",
324            "accession": "IGVFDO9142EUBJ",
325            "aliases": [
326                "ali-mortazavi:096_WSBJ_10F"
327            ],
328            "sex": "female",
329            "status": "released",
330            "strain_background": "WSB/EiJ (WSB)",
331            "taxa": "Mus musculus"
332        },
333        {
334            "@id": "/rodent-donors/IGVFDO1452VDIT/",
335            "accession": "IGVFDO1452VDIT",
336            "aliases": [
337                "ali-mortazavi:035_AJ_10M"
338            ],
339            "sex": "male",
340            "status": "released",
341            "strain_background": "A/J (AJ)",
342            "taxa": "Mus musculus"
343        },
344        {
345            "@id": "/rodent-donors/IGVFDO3207TERA/",
346            "accession": "IGVFDO3207TERA",
347            "aliases": [
348                "ali-mortazavi:086_CASTJ_10F"
349            ],
350            "sex": "female",
351            "status": "released",
352            "strain_background": "CAST/EiJ (CAST)",
353            "taxa": "Mus musculus"
354        },
355        {
356            "@id": "/rodent-donors/IGVFDO1643VEDI/",
357            "accession": "IGVFDO1643VEDI",
358            "aliases": [
359                "ali-mortazavi:019_B6J_10M"
360            ],
361            "sex": "male",
362            "status": "released",
363            "strain_background": "C57BL/6J (B6)",
364            "taxa": "Mus musculus"
365        },
366        {
367            "@id": "/rodent-donors/IGVFDO2753JGYS/",
368            "accession": "IGVFDO2753JGYS",
369            "aliases": [
370                "ali-mortazavi:095_CASTJ_10M"
371            ],
372            "sex": "male",
373            "status": "released",
374            "strain_background": "CAST/EiJ (CAST)",
375            "taxa": "Mus musculus"
376        },
377        {
378            "@id": "/rodent-donors/IGVFDO4469VYEZ/",
379            "accession": "IGVFDO4469VYEZ",
380            "aliases": [
381                "ali-mortazavi:073_NODJ_10M"
382            ],
383            "sex": "male",
384            "status": "released",
385            "strain_background": "NOD/ShiLtJ (NOD)",
386            "taxa": "Mus musculus"
387        },
388        {
389            "@id": "/rodent-donors/IGVFDO6066JIEJ/",
390            "accession": "IGVFDO6066JIEJ",
391            "aliases": [
392                "ali-mortazavi:043_129S1J_10M"
393            ],
394            "sex": "male",
395            "status": "released",
396            "strain_background": "129S1/SvImJ (129)",
397            "taxa": "Mus musculus"
398        },
399        {
400            "@id": "/rodent-donors/IGVFDO6141KSSQ/",
401            "accession": "IGVFDO6141KSSQ",
402            "aliases": [
403                "ali-mortazavi:024_B6J_10F"
404            ],
405            "sex": "female",
406            "status": "released",
407            "strain_background": "C57BL/6J (B6)",
408            "taxa": "Mus musculus"
409        },
410        {
411            "@id": "/rodent-donors/IGVFDO5523UFUN/",
412            "accession": "IGVFDO5523UFUN",
413            "aliases": [
414                "ali-mortazavi:070_NODJ_10F"
415            ],
416            "sex": "female",
417            "status": "released",
418            "strain_background": "NOD/ShiLtJ (NOD)",
419            "taxa": "Mus musculus"
420        },
421        {
422            "@id": "/rodent-donors/IGVFDO2301HIUQ/",
423            "accession": "IGVFDO2301HIUQ",
424            "aliases": [
425                "ali-mortazavi:067_NODJ_10M"
426            ],
427            "sex": "male",
428            "status": "released",
429            "strain_background": "NOD/ShiLtJ (NOD)",
430            "taxa": "Mus musculus"
431        },
432        {
433            "@id": "/rodent-donors/IGVFDO1477BPVO/",
434            "accession": "IGVFDO1477BPVO",
435            "aliases": [
436                "ali-mortazavi:088_CASTJ_10F"
437            ],
438            "sex": "female",
439            "status": "released",
440            "strain_background": "CAST/EiJ (CAST)",
441            "taxa": "Mus musculus"
442        },
443        {
444            "@id": "/rodent-donors/IGVFDO3655FKMR/",
445            "accession": "IGVFDO3655FKMR",
446            "aliases": [
447                "ali-mortazavi:025_B6J_10M"
448            ],
449            "sex": "male",
450            "status": "released",
451            "strain_background": "C57BL/6J (B6)",
452            "taxa": "Mus musculus"
453        },
454        {
455            "@id": "/rodent-donors/IGVFDO2645GUSC/",
456            "accession": "IGVFDO2645GUSC",
457            "aliases": [
458                "ali-mortazavi:060_WSBJ_10F"
459            ],
460            "sex": "female",
461            "status": "released",
462            "strain_background": "WSB/EiJ (WSB)",
463            "taxa": "Mus musculus"
464        },
465        {
466            "@id": "/rodent-donors/IGVFDO2831PZHE/",
467            "accession": "IGVFDO2831PZHE",
468            "aliases": [
469                "ali-mortazavi:077_PWKJ_10M"
470            ],
471            "sex": "male",
472            "status": "released",
473            "strain_background": "PWK/PhJ (PWK)",
474            "taxa": "Mus musculus"
475        },
476        {
477            "@id": "/rodent-donors/IGVFDO7007WBAX/",
478            "accession": "IGVFDO7007WBAX",
479            "aliases": [
480                "ali-mortazavi:016_B6J_10F"
481            ],
482            "sex": "female",
483            "status": "released",
484            "strain_background": "C57BL/6J (B6)",
485            "taxa": "Mus musculus"
486        },
487        {
488            "@id": "/rodent-donors/IGVFDO0813DZTW/",
489            "accession": "IGVFDO0813DZTW",
490            "aliases": [
491                "ali-mortazavi:069_NODJ_10M"
492            ],
493            "sex": "male",
494            "status": "released",
495            "strain_background": "NOD/ShiLtJ (NOD)",
496            "taxa": "Mus musculus"
497        },
498        {
499            "@id": "/rodent-donors/IGVFDO0853BCOL/",
500            "accession": "IGVFDO0853BCOL",
501            "aliases": [
502                "ali-mortazavi:058_WSBJ_10F"
503            ],
504            "sex": "female",
505            "status": "released",
506            "strain_background": "WSB/EiJ (WSB)",
507            "taxa": "Mus musculus"
508        },
509        {
510            "@id": "/rodent-donors/IGVFDO7610XXRR/",
511            "accession": "IGVFDO7610XXRR",
512            "aliases": [
513                "ali-mortazavi:072_NODJ_10F"
514            ],
515            "sex": "female",
516            "status": "released",
517            "strain_background": "NOD/ShiLtJ (NOD)",
518            "taxa": "Mus musculus"
519        },
520        {
521            "@id": "/rodent-donors/IGVFDO8958JQIY/",
522            "accession": "IGVFDO8958JQIY",
523            "aliases": [
524                "ali-mortazavi:047_NZOJ_10M"
525            ],
526            "sex": "male",
527            "status": "released",
528            "strain_background": "NZO/H1LtJ (NZO)",
529            "taxa": "Mus musculus"
530        },
531        {
532            "@id": "/rodent-donors/IGVFDO9199TPBC/",
533            "accession": "IGVFDO9199TPBC",
534            "aliases": [
535                "ali-mortazavi:071_NODJ_10M"
536            ],
537            "sex": "male",
538            "status": "released",
539            "strain_background": "NOD/ShiLtJ (NOD)",
540            "taxa": "Mus musculus"
541        },
542        {
543            "@id": "/rodent-donors/IGVFDO9340WGNV/",
544            "accession": "IGVFDO9340WGNV",
545            "aliases": [
546                "ali-mortazavi:037_129S1J_10M"
547            ],
548            "sex": "male",
549            "status": "released",
550            "strain_background": "129S1/SvImJ (129)",
551            "taxa": "Mus musculus"
552        },
553        {
554            "@id": "/rodent-donors/IGVFDO1744FDIX/",
555            "accession": "IGVFDO1744FDIX",
556            "aliases": [
557                "ali-mortazavi:036_129S1J_10F"
558            ],
559            "sex": "female",
560            "status": "released",
561            "strain_background": "129S1/SvImJ (129)",
562            "taxa": "Mus musculus"
563        },
564        {
565            "@id": "/rodent-donors/IGVFDO2292YGGE/",
566            "accession": "IGVFDO2292YGGE",
567            "aliases": [
568                "ali-mortazavi:049_NZOJ_10M"
569            ],
570            "sex": "male",
571            "status": "released",
572            "strain_background": "NZO/H1LtJ (NZO)",
573            "taxa": "Mus musculus"
574        },
575        {
576            "@id": "/rodent-donors/IGVFDO3762EAWT/",
577            "accession": "IGVFDO3762EAWT",
578            "aliases": [
579                "ali-mortazavi:076_PWKJ_10F"
580            ],
581            "sex": "female",
582            "status": "released",
583            "strain_background": "PWK/PhJ (PWK)",
584            "taxa": "Mus musculus"
585        },
586        {
587            "@id": "/rodent-donors/IGVFDO5258MBVH/",
588            "accession": "IGVFDO5258MBVH",
589            "aliases": [
590                "ali-mortazavi:040_129S1J_10F"
591            ],
592            "sex": "female",
593            "status": "released",
594            "strain_background": "129S1/SvImJ (129)",
595            "taxa": "Mus musculus"
596        },
597        {
598            "@id": "/rodent-donors/IGVFDO9202WGJZ/",
599            "accession": "IGVFDO9202WGJZ",
600            "aliases": [
601                "ali-mortazavi:085_PWKJ_10M"
602            ],
603            "sex": "male",
604            "status": "released",
605            "strain_background": "PWK/PhJ (PWK)",
606            "taxa": "Mus musculus"
607        },
608        {
609            "@id": "/rodent-donors/IGVFDO9890MXGN/",
610            "accession": "IGVFDO9890MXGN",
611            "aliases": [
612                "ali-mortazavi:068_NODJ_10F"
613            ],
614            "sex": "female",
615            "status": "released",
616            "strain_background": "NOD/ShiLtJ (NOD)",
617            "taxa": "Mus musculus"
618        },
619        {
620            "@id": "/rodent-donors/IGVFDO9560CEGZ/",
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1276    ],
1277    "input_for": [
1278        "/analysis-sets/IGVFDS7181DOOU/"
1279    ],
1280    "lab": {
1281        "@id": "/labs/ali-mortazavi/",
1282        "title": "Ali Mortazavi, UCI"
1283    },
1284    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
1285    "onlist_files": [
1286        "/tabular-files/IGVFFI2591OFQO/",
1287        "/tabular-files/IGVFFI1138MCVX/"
1288    ],
1289    "onlist_method": "multi",
1290    "preferred_assay_title": "Parse SPLiT-seq",
1291    "protocols": [
1292        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-81wgbxzdylpk/v2",
1293        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
1294        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
1295        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
1296    ],
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1298    "samples": [
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1307            "aliases": [
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1312                "tissue",
1313                "multiplexed sample"
1314            ],
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1321                    "@type": [
1322                        "SampleTerm",
1323                        "OntologyTerm",
1324                        "Item"
1325                    ],
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1329                },
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1333                        "SampleTerm",
1334                        "OntologyTerm",
1335                        "Item"
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1344            "taxa": "Mus musculus",
1345            "treatments": []
1346        }
1347    ],
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1353    "strand_specificity": "5 prime to 3 prime",
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1356        "title": "Diane Trout"
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1359    "summary": "Parse SPLiT-seq",
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1361}