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INDEXED
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MeasurementSet
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IGVFDS1811BKZP
IGVFDS1811BKZP
released
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Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C38_day5
Attribution
Chongyuan Luo, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0307CSXE
fastq
reads
R2
1
Illumina NovaSeq X
8
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI0599GHZE
fastq
reads
R2
1
Illumina NovaSeq X
4
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI0967TCIZ
fastq
reads
R2
1
Illumina NovaSeq X
1
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1106KELZ
fastq
reads
R1
1
Illumina NovaSeq X
3
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2353ZXIY
fastq
reads
R1
1
Illumina NovaSeq X
5
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI3061KCIJ
fastq
reads
R2
1
Illumina NovaSeq X
3
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI3184GKRT
fastq
reads
R1
1
Illumina NovaSeq X
1
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI3187SAWG
fastq
reads
R2
1
Illumina NovaSeq X
2
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI3372JFIQ
fastq
reads
R1
1
Illumina NovaSeq X
2
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI4361BOTN
fastq
reads
R2
1
Illumina NovaSeq X
6
2.8 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1171PVMI
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2328XGNY
chongyuan-luo:C38
unspecified
Homo sapiens