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INDEXED
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MeasurementSet
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IGVFDS1790XLZR
IGVFDS1790XLZR
preview
GRU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
scATAC-seq
Assay Term
single-cell ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 21 more samples
Protocols
https://www.protocols.io/view/scatac-pre-indexing-kit-10x-scatac-seq-n92ld5bj8v5b/v1
Aliases
maya-kasowski:Scale_scATAC
Attribution
Maya Kasowski, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
24 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1148TXMZ
fastq
reads
I1
1
Barcode index
Illumina NovaSeq 6000
6
9.7 GB
Maya Kasowski, Stanford
validated
IGVFFI2398NHKF
fastq
reads
I1
1
Barcode index
Illumina NovaSeq 6000
2
8.9 GB
Maya Kasowski, Stanford
validated
IGVFFI3045PSVF
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
4
31 GB
Maya Kasowski, Stanford
validated
IGVFFI3361KDGU
fastq
reads
I2
1
Barcode index
Illumina NovaSeq 6000
3
13 GB
Maya Kasowski, Stanford
validated
IGVFFI3960XUKA
fastq
reads
I2
1
Barcode index
Illumina NovaSeq 6000
2
12 GB
Maya Kasowski, Stanford
validated
IGVFFI4003TGJY
fastq
reads
R2
1
Read 2
Illumina NovaSeq 6000
3
43 GB
Maya Kasowski, Stanford
validated
IGVFFI4367MEQN
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
1
36 GB
Maya Kasowski, Stanford
validated
IGVFFI4893CRTK
fastq
reads
R2
1
Read 2
Illumina NovaSeq 6000
4
40 GB
Maya Kasowski, Stanford
validated
IGVFFI4919YHUQ
fastq
reads
I2
1
Barcode index
Illumina NovaSeq 6000
4
12 GB
Maya Kasowski, Stanford
validated
IGVFFI5012UHJY
fastq
reads
R2
1
Read 2
Illumina NovaSeq 6000
6
44 GB
Maya Kasowski, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM1625LLXE
MultiplexedSample
bone marrow
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 21 more samples
Donors
23 items
1
2
3
Accession
Aliases
Sex
Taxa
IGVFDO0898EWTR
maya-kasowski:donor_4238
male
Homo sapiens
IGVFDO0903GCXW
maya-kasowski:donor_4463
female
Homo sapiens
IGVFDO1129QRIW
maya-kasowski:donor_4371
male
Homo sapiens
IGVFDO1836DUYP
maya-kasowski:donor_4089
unspecified
Homo sapiens
IGVFDO2417NVHU
maya-kasowski:donor_4352
female
Homo sapiens
IGVFDO2788XNBM
maya-kasowski:donor_4048
unspecified
Homo sapiens
IGVFDO3006RCEY
maya-kasowski:donor_4271
unspecified
Homo sapiens
IGVFDO3010QRAU
maya-kasowski:donor_4111
female
Homo sapiens
IGVFDO3127CQWI
maya-kasowski:donor_4146
female
Homo sapiens
IGVFDO3656DWZS
maya-kasowski:donor_4080
female
Homo sapiens