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IGVFDS1789AOJS

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP016_G1_ATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
1
Read 1
2257VGLT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
2257VGLT3
6
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
2257VGLT3
5
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
2257VGLT3
5
491 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
2257VGLT3
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
2257VGLT3
8
496 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
2257VGLT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
2257VGLT3
5
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
2257VGLT3
5
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
2257VGLT3
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1344
female
Homo sapiens
  • igvf:corces_donor_BANN1554
male
Homo sapiens
  • igvf:corces_donor_BANN1864
male
Homo sapiens
  • igvf:corces_donor_BANN1747
male
Homo sapiens
  • igvf:corces_donor_BANN1839
female
Homo sapiens
  • igvf:corces_donor_BANN1830
female
Homo sapiens
  • igvf:corces_donor_BANN1957
male
Homo sapiens
  • igvf:corces_donor_BANN0341
male
Homo sapiens
  • igvf:corces_donor_BANN1623
male
Homo sapiens
  • igvf:corces_donor_BANN0874
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP016_G1_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF