{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"bradley-bernstein:scRNA Lib 32",
"buenrostro-bernstein:scRNA Lib 32"
],
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"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM5211IRON](/primary-cells/IGVFSM5211IRON/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM5211IRON/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1736NDNN](/measurement-sets/IGVFDS1736NDNN/) has sequence file(s): [IGVFFI3946QXAY](/sequence-files/IGVFFI3946QXAY/), [IGVFFI3459EEZD](/sequence-files/IGVFFI3459EEZD/), [IGVFFI1442AGYN](/sequence-files/IGVFFI1442AGYN/), [IGVFFI4421WLXJ](/sequence-files/IGVFFI4421WLXJ/), [IGVFFI0211NELV](/sequence-files/IGVFFI0211NELV/), [IGVFFI0893NCIH](/sequence-files/IGVFFI0893NCIH/), [IGVFFI7191EOSG](/sequence-files/IGVFFI7191EOSG/), [IGVFFI2310ZAQB](/sequence-files/IGVFFI2310ZAQB/), [IGVFFI5787AVMY](/sequence-files/IGVFFI5787AVMY/), [IGVFFI2274JAGZ](/sequence-files/IGVFFI2274JAGZ/), [IGVFFI3486QOGF](/sequence-files/IGVFFI3486QOGF/), [IGVFFI8234IGWL](/sequence-files/IGVFFI8234IGWL/), [IGVFFI1813WMDN](/sequence-files/IGVFFI1813WMDN/), [IGVFFI9405DXNU](/sequence-files/IGVFFI9405DXNU/), [IGVFFI2783RJOX](/sequence-files/IGVFFI2783RJOX/), [IGVFFI5830BKOW](/sequence-files/IGVFFI5830BKOW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
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"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1736NDNN/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1736NDNN](/measurement-sets/IGVFDS1736NDNN/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1736NDNN/"
}
]
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"bradley-bernstein:BioSam 4564_SS-PKR 6",
"buenrostro-bernstein:BioSam 4564_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:33.508349+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "f7b12621-2379-4f78-9525-3e9965257393"
}