IGVFDS1709UIOJ

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus RNA sequencing assay (10x multiome)

Assay Term

single-nucleus RNA sequencing assay

Sample Summaries

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X030_G1_RNA

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI0276ITFN

fastq

reads

Illumina NovaSeq 6000

HV7VHDSX5

1.8 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI4152ZAAA

fastq

reads

Illumina NovaSeq 6000

HV7VHDSX5

18 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI5122JYVD

fastq

reads

Illumina NovaSeq 6000

HV7VHDSX5

15 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI5355MEAC

fastq

reads

Illumina NovaSeq 6000

HV7VHDSX5

1.7 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM9015BILW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples