{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1677SYVP/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1677SYVP",
"aliases": [
"bradley-bernstein:scRNA Lib 41",
"buenrostro-bernstein:scRNA Lib 41"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1677SYVP](/measurement-sets/IGVFDS1677SYVP/) has sequence file(s): [IGVFFI8614LEQP](/sequence-files/IGVFFI8614LEQP/), [IGVFFI6463KDWM](/sequence-files/IGVFFI6463KDWM/), [IGVFFI2387HZFQ](/sequence-files/IGVFFI2387HZFQ/), [IGVFFI7655DZXP](/sequence-files/IGVFFI7655DZXP/), [IGVFFI9937ZYCH](/sequence-files/IGVFFI9937ZYCH/), [IGVFFI9831NOJN](/sequence-files/IGVFFI9831NOJN/), [IGVFFI9135RYMH](/sequence-files/IGVFFI9135RYMH/), [IGVFFI6548NFXG](/sequence-files/IGVFFI6548NFXG/), [IGVFFI9617JLFK](/sequence-files/IGVFFI9617JLFK/), [IGVFFI8700ETJD](/sequence-files/IGVFFI8700ETJD/), [IGVFFI2900LVQZ](/sequence-files/IGVFFI2900LVQZ/), [IGVFFI3083HSBN](/sequence-files/IGVFFI3083HSBN/), [IGVFFI5518IMQQ](/sequence-files/IGVFFI5518IMQQ/), [IGVFFI5544TTAQ](/sequence-files/IGVFFI5544TTAQ/), [IGVFFI6998ETSF](/sequence-files/IGVFFI6998ETSF/), [IGVFFI0634ZSRC](/sequence-files/IGVFFI0634ZSRC/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1677SYVP/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8077ATDC](/primary-cells/IGVFSM8077ATDC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8077ATDC/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1677SYVP](/measurement-sets/IGVFDS1677SYVP/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1677SYVP/"
}
]
},
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"@id": "/awards/HG011986/",
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
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],
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"taxa": "Homo sapiens"
}
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"accession": "IGVFSM8077ATDC",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 7",
"buenrostro-bernstein:BioSam 4567_SS-PKR 7"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:57.927601+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "ed082d77-0872-4692-aa06-c334329d1b71"
}