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INDEXED
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MeasurementSet
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IGVFDS1675WFHV
IGVFDS1675WFHV
released
Json view
File Set Type
experimental data
Summary
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Protocols
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep2
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1766LEES
fastq
reads
R2
2
IGVFFI1392XJCR
Illumina NovaSeq 6000
4
16 GB
Charles Gersbach, Duke
validated
IGVFFI2784HYOZ
fastq
reads
R2
2
IGVFFI1530GXXJ
Illumina NovaSeq 6000
2
16 GB
Charles Gersbach, Duke
validated
IGVFFI2833ZOSW
fastq
reads
R2
2
IGVFFI4753EPLN
Illumina NovaSeq 6000
3
16 GB
Charles Gersbach, Duke
validated
IGVFFI3561WXFX
fastq
reads
R1
2
IGVFFI4753EPLN
Illumina NovaSeq 6000
3
6.3 GB
Charles Gersbach, Duke
validated
IGVFFI4210ZDGH
fastq
reads
R2
2
IGVFFI9602EQCE
Illumina NovaSeq 6000
1
16 GB
Charles Gersbach, Duke
validated
IGVFFI4347FRPM
fastq
reads
R1
2
IGVFFI9602EQCE
Illumina NovaSeq 6000
1
6.3 GB
Charles Gersbach, Duke
validated
IGVFFI5263FBFP
fastq
reads
R1
2
IGVFFI1530GXXJ
Illumina NovaSeq 6000
2
6.3 GB
Charles Gersbach, Duke
validated
IGVFFI6604BYNW
fastq
reads
R1
2
IGVFFI1392XJCR
Illumina NovaSeq 6000
4
6.3 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6223YCQV
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS0821YMMV
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO6082RNLT
charles-gersbach:cd8-tcells-donor-7
unspecified
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS0821YMMV
guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1405WMSH
IGVFFI2489BLJI
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5239SBBT
AnalysisSet
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispra
Charles Gersbach, Duke
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS0993OMZM
AuxiliarySet
gRNA sequencing for CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI2667TSYX
,
IGVFFI2310TPCX
,
IGVFFI8495QQKY
,
IGVFFI2156GTTL
,
IGVFFI3477FTDC
,
IGVFFI5776QDOU
,
IGVFFI1815OERU
,
IGVFFI8859ADJH
charles-gersbach:cd8-tcells-perturb-seq-crispra-grna-rep2
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke