Home

IGVFDS1673EWYY

released
File Set Type
experimental data
Summary
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Assay Term
massively parallel reporter assay
Sample Summaries
  • neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library
Protocols
Publications

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
R1
1
Barcode forward
732 MB
Nadav Ahituv, UCSF
validated
fastq
reads
R2
1
UMI
638 MB
Nadav Ahituv, UCSF
validated
fastq
reads
R3
1
Barcode reverse
733 MB
Nadav Ahituv, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
unspecified
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

File Sets Using This Measurement Set as an Input

2 items
AnalysisSet
lentiMPRA: reporter experiment
Nadav Ahituv, UCSF
AnalysisSet
lentiMPRA: reporter genomic variant effects
Nadav Ahituv, UCSF

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Nadav Ahituv, UCSF

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF