{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1656AIJU",
"aliases": [
"bradley-bernstein:scRNA Lib 46",
"buenrostro-bernstein:scRNA Lib 46"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8189RYZE](/primary-cells/IGVFSM8189RYZE/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8189RYZE/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1656AIJU](/measurement-sets/IGVFDS1656AIJU/) has sequence file(s): [IGVFFI7768DCZI](/sequence-files/IGVFFI7768DCZI/), [IGVFFI8055OFDT](/sequence-files/IGVFFI8055OFDT/), [IGVFFI5759UDMC](/sequence-files/IGVFFI5759UDMC/), [IGVFFI3657DXDX](/sequence-files/IGVFFI3657DXDX/), [IGVFFI8458RCKW](/sequence-files/IGVFFI8458RCKW/), [IGVFFI0273FLVG](/sequence-files/IGVFFI0273FLVG/), [IGVFFI5131AEJV](/sequence-files/IGVFFI5131AEJV/), [IGVFFI9536UREQ](/sequence-files/IGVFFI9536UREQ/), [IGVFFI5625DIAJ](/sequence-files/IGVFFI5625DIAJ/), [IGVFFI4542RRMA](/sequence-files/IGVFFI4542RRMA/), [IGVFFI5082HAOD](/sequence-files/IGVFFI5082HAOD/), [IGVFFI1943HLZA](/sequence-files/IGVFFI1943HLZA/), [IGVFFI4754LAOZ](/sequence-files/IGVFFI4754LAOZ/), [IGVFFI5778GWPV](/sequence-files/IGVFFI5778GWPV/), [IGVFFI8097VCVY](/sequence-files/IGVFFI8097VCVY/), [IGVFFI6890LWGK](/sequence-files/IGVFFI6890LWGK/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1656AIJU/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1656AIJU](/measurement-sets/IGVFDS1656AIJU/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1656AIJU/"
}
]
},
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"accession": "IGVFSM8189RYZE",
"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 8",
"buenrostro-bernstein:BioSam 4566_SS-PKR 8"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:17.154369+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "f62572c9-1b31-4803-b1e4-a97f865a87bd"
}