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IGVFDS1652TDRC

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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP007_G8_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
1
Read 1
223JGVLT3
2
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223JGVLT3
1
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223JGVLT3
4
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JGVLT3
3
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223JGVLT3
2
898 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223JGVLT3
4
890 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223JGVLT3
3
392 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223JGVLT3
4
391 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223JGVLT3
1
872 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223JGVLT3
3
891 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1030
male
Homo sapiens
  • igvf:corces_donor_BANN0950
male
Homo sapiens
  • igvf:corces_donor_BANN1644
male
Homo sapiens
  • igvf:corces_donor_BANN2057
male
Homo sapiens
  • igvf:corces_donor_BANN1234
male
Homo sapiens
  • igvf:corces_donor_BANN2005
male
Homo sapiens
  • igvf:corces_donor_BANN1349
female
Homo sapiens
  • igvf:corces_donor_BANN0621
male
Homo sapiens
  • igvf:corces_donor_BANN1872
female
Homo sapiens
  • igvf:corces_donor_BANN1637
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP007_G8_RNA
Ryan Corces, Gladstone Institute UCSF