{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1601YMKN/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1601YMKN",
"aliases": [
"bradley-bernstein:scRNA Lib 10",
"buenrostro-bernstein:scRNA Lib 10"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9691RJDN](/primary-cells/IGVFSM9691RJDN/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9691RJDN/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1601YMKN](/measurement-sets/IGVFDS1601YMKN/) has sequence file(s): [IGVFFI8411WMIF](/sequence-files/IGVFFI8411WMIF/), [IGVFFI7320SFJC](/sequence-files/IGVFFI7320SFJC/), [IGVFFI1661TZNI](/sequence-files/IGVFFI1661TZNI/), [IGVFFI1669WJHH](/sequence-files/IGVFFI1669WJHH/), [IGVFFI3580IZIT](/sequence-files/IGVFFI3580IZIT/), [IGVFFI3099IQYU](/sequence-files/IGVFFI3099IQYU/), [IGVFFI2211KCYK](/sequence-files/IGVFFI2211KCYK/), [IGVFFI8987ZOYE](/sequence-files/IGVFFI8987ZOYE/), [IGVFFI0650VXGO](/sequence-files/IGVFFI0650VXGO/), [IGVFFI8631IYWK](/sequence-files/IGVFFI8631IYWK/), [IGVFFI7377GHAP](/sequence-files/IGVFFI7377GHAP/), [IGVFFI1140ZAKY](/sequence-files/IGVFFI1140ZAKY/), [IGVFFI4067IPVN](/sequence-files/IGVFFI4067IPVN/), [IGVFFI3433GHDE](/sequence-files/IGVFFI3433GHDE/), [IGVFFI3664GTYP](/sequence-files/IGVFFI3664GTYP/), [IGVFFI1085GFRM](/sequence-files/IGVFFI1085GFRM/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1601YMKN/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1601YMKN](/measurement-sets/IGVFDS1601YMKN/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1601YMKN/"
}
]
},
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"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
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"buenrostro-bernstein:Donor 1511"
],
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"status": "released",
"taxa": "Homo sapiens"
}
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 2",
"buenrostro-bernstein:BioSam 4566_SS-PKR 2"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:35:50.858551+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "a835dfb6-3ed9-44db-941a-69f06981f448"
}