IGVFDS1581RZTR

released
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Assay Term
Sample Summaries
  • multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snRNA-seq_igvf12_10x6

Sequencing Results (Illumina)

28 items
Read Names
fastq
reads
I1
1
225LWLLT3
3
863 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
225LWLLT3
2
3.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225LWLLT3
6
846 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225LWLLT3
4
862 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
5
896 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
2
884 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
3
885 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
225LWLLT3
3
7.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
6
876 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
1
858 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Donors

3 items
Aliases
  • ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
  • ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
  • ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf12_analysis_set_10x6
Ansuman Satpathy, Stanford
1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf12_10x6
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf12_10x6
Ansuman Satpathy, Stanford

Attribution

Award
Principal Investigator(s)
Contact P.I.
Lab