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IGVFDS1570UJMU

released
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snRNA-seq_igvf12_10x1

Sequencing Results (Illumina)

28 items
Read Names
fastq
reads
I2
1
225LWLLT3
6
992 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
225LWLLT3
1
7.8 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
225LWLLT3
4
8.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
225LWLLT3
5
8.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225LWLLT3
2
1.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225LWLLT3
4
1.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225LWLLT3
5
1.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
5
1.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
225LWLLT3
1
968 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
225LWLLT3
6
7.9 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Donors

3 items
Aliases
  • ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
  • ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
  • ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf12_analysis_set
  • ansuman-satpathy:igvf12_analysis_set_10x1
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf12_10x1
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf12_10x1
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford