Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS1560LMQZ
IGVFDS1560LMQZ
released
Json view
File Set Type
experimental data
Summary
scATAC-seq
Assay Term
single-cell ATAC-seq
Sample Summaries
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44
Protocols
https://www.protocols.io/file/n92rb7r27.pdf
Aliases
jay-shendure:scATAC_mEBs_rep1_10XlaneA_reads
Publications
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0031OCKI
fastq
reads
I1
2
IGVFFI1006OXIG
Illumina NextSeq 500
H3HFJBGXG
1
753 MB
Jay Shendure, UW
validated
IGVFFI3937KXBX
fastq
reads
I2
1
IGVFFI1077TFQS
Illumina NextSeq 500
H3JK7BGXG
1
1.8 GB
Jay Shendure, UW
validated
IGVFFI4010FPRN
fastq
reads
R1
1
IGVFFI1077TFQS
Illumina NextSeq 500
H3JK7BGXG
1
3.4 GB
Jay Shendure, UW
validated
IGVFFI4853BUVD
fastq
reads
R2
1
IGVFFI1077TFQS
Illumina NextSeq 500
H3JK7BGXG
1
3.5 GB
Jay Shendure, UW
validated
IGVFFI7584IHOQ
fastq
reads
R1
2
IGVFFI1006OXIG
Illumina NextSeq 500
H3HFJBGXG
1
3.4 GB
Jay Shendure, UW
validated
IGVFFI8994UMQU
fastq
reads
I1
1
IGVFFI1077TFQS
Illumina NextSeq 500
H3JK7BGXG
1
747 MB
Jay Shendure, UW
validated
IGVFFI9570VQUJ
fastq
reads
R2
2
IGVFFI1006OXIG
Illumina NextSeq 500
H3HFJBGXG
1
3.5 GB
Jay Shendure, UW
validated
IGVFFI9611BARD
fastq
reads
I2
2
IGVFFI1006OXIG
Illumina NextSeq 500
H3HFJBGXG
1
1.8 GB
Jay Shendure, UW
validated
Samples
Donors
File Sets Using This Measurement Set as an Input
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW