IGVFDS1525DIBQ

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus RNA sequencing assay (10x multiome)

Assay Term

single-nucleus RNA sequencing assay

Sample Summaries

multiplexed sample: Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X019_G4_RNA

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI1738NHKG

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

1.1 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI3141FNXU

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

11 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI3313IHDX

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

1.4 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI9607HMDG

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

13 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM3682UJBY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples