{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1519SERB",
"aliases": [
"bradley-bernstein:scATAC Lib 45",
"buenrostro-bernstein:scATAC Lib 45"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8124KBOC](/primary-cells/IGVFSM8124KBOC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8124KBOC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1519SERB](/measurement-sets/IGVFDS1519SERB/) has sequence file(s): [IGVFFI0213YZWA](/sequence-files/IGVFFI0213YZWA/), [IGVFFI0552COST](/sequence-files/IGVFFI0552COST/), [IGVFFI2182MIKF](/sequence-files/IGVFFI2182MIKF/), [IGVFFI6476FZNU](/sequence-files/IGVFFI6476FZNU/), [IGVFFI4619ALFP](/sequence-files/IGVFFI4619ALFP/), [IGVFFI3210UYWY](/sequence-files/IGVFFI3210UYWY/), [IGVFFI6255EEIS](/sequence-files/IGVFFI6255EEIS/), [IGVFFI8956DJGC](/sequence-files/IGVFFI8956DJGC/), [IGVFFI8964STNA](/sequence-files/IGVFFI8964STNA/), [IGVFFI6054VCDL](/sequence-files/IGVFFI6054VCDL/), [IGVFFI1714ZOLR](/sequence-files/IGVFFI1714ZOLR/), [IGVFFI1159IWHB](/sequence-files/IGVFFI1159IWHB/), [IGVFFI8073RFQH](/sequence-files/IGVFFI8073RFQH/), [IGVFFI8934UDDK](/sequence-files/IGVFFI8934UDDK/), [IGVFFI3541KEYU](/sequence-files/IGVFFI3541KEYU/), [IGVFFI0438FAOD](/sequence-files/IGVFFI0438FAOD/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1519SERB/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1519SERB](/measurement-sets/IGVFDS1519SERB/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1519SERB/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:57.420836+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "b19be837-8b5b-4be2-acc5-bb887deaa64b"
}