IGVFDS1511UWOY

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS1511UWOY/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS1511UWOY",
10    "aliases": [
11        "ali-mortazavi:008_67G_illumina"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "mismatched status",
25                "detail": "Released multiplexed sample [IGVFSM9312MNIK](/multiplexed-samples/IGVFSM9312MNIK/) has in progress subobject tabular file [IGVFFI4091WGTI](/tabular-files/IGVFFI4091WGTI/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/multiplexed-samples/IGVFSM9312MNIK/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "Multiplexed sample [IGVFSM9312MNIK](/multiplexed-samples/IGVFSM9312MNIK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_sample_missing_publication",
37                "path": "/multiplexed-samples/IGVFSM9312MNIK/"
38            },
39            {
40                "category": "missing publication",
41                "detail": "Measurement set [IGVFDS1511UWOY](/measurement-sets/IGVFDS1511UWOY/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_file_set_missing_publication",
45                "path": "/measurement-sets/IGVFDS1511UWOY/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS1511UWOY](/measurement-sets/IGVFDS1511UWOY/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS1511UWOY/"
54            },
55            {
56                "category": "mismatched status",
57                "detail": "Released measurement set [IGVFDS1511UWOY](/measurement-sets/IGVFDS1511UWOY/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_item_status",
61                "path": "/measurement-sets/IGVFDS1511UWOY/"
62            }
63        ]
64    },
65    "award": {
66        "@id": "/awards/HG012077/",
67        "component": "mapping",
68        "contact_pi": {
69            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
70            "title": "Ali Mortazavi"
71        },
72        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
73    },
74    "control_for": [],
75    "creation_timestamp": "2023-10-10T16:43:13.481418+00:00",
76    "data_use_limitation_summaries": [
77        "no certificate"
78    ],
79    "donors": [
80        {
81            "@id": "/rodent-donors/IGVFDO6607QZPA/",
82            "accession": "IGVFDO6607QZPA",
83            "aliases": [
84                "ali-mortazavi:050_NZOJ_10F"
85            ],
86            "sex": "female",
87            "status": "released",
88            "strain_background": "NZO/H1LtJ (NZO)",
89            "taxa": "Mus musculus"
90        },
91        {
92            "@id": "/rodent-donors/IGVFDO0430HQIU/",
93            "accession": "IGVFDO0430HQIU",
94            "aliases": [
95                "ali-mortazavi:041_129S1J_10M"
96            ],
97            "sex": "male",
98            "status": "released",
99            "strain_background": "129S1/SvImJ (129)",
100            "taxa": "Mus musculus"
101        },
102        {
103            "@id": "/rodent-donors/IGVFDO3436ZMLY/",
104            "accession": "IGVFDO3436ZMLY",
105            "aliases": [
106                "ali-mortazavi:091_CASTJ_10M"
107            ],
108            "sex": "male",
109            "status": "released",
110            "strain_background": "CAST/EiJ (CAST)",
111            "taxa": "Mus musculus"
112        },
113        {
114            "@id": "/rodent-donors/IGVFDO5177QEWF/",
115            "accession": "IGVFDO5177QEWF",
116            "aliases": [
117                "ali-mortazavi:063_WSBJ_10M"
118            ],
119            "sex": "male",
120            "status": "released",
121            "strain_background": "WSB/EiJ (WSB)",
122            "taxa": "Mus musculus"
123        },
124        {
125            "@id": "/rodent-donors/IGVFDO6066JIEJ/",
126            "accession": "IGVFDO6066JIEJ",
127            "aliases": [
128                "ali-mortazavi:043_129S1J_10M"
129            ],
130            "sex": "male",
131            "status": "released",
132            "strain_background": "129S1/SvImJ (129)",
133            "taxa": "Mus musculus"
134        },
135        {
136            "@id": "/rodent-donors/IGVFDO6141KSSQ/",
137            "accession": "IGVFDO6141KSSQ",
138            "aliases": [
139                "ali-mortazavi:024_B6J_10F"
140            ],
141            "sex": "female",
142            "status": "released",
143            "strain_background": "C57BL/6J (B6)",
144            "taxa": "Mus musculus"
145        },
146        {
147            "@id": "/rodent-donors/IGVFDO5502NJPS/",
148            "accession": "IGVFDO5502NJPS",
149            "aliases": [
150                "ali-mortazavi:038_129S1J_10F"
151            ],
152            "sex": "female",
153            "status": "released",
154            "strain_background": "129S1/SvImJ (129)",
155            "taxa": "Mus musculus"
156        },
157        {
158            "@id": "/rodent-donors/IGVFDO0696DMIA/",
159            "accession": "IGVFDO0696DMIA",
160            "aliases": [
161                "ali-mortazavi:057_WSBJ_10M"
162            ],
163            "sex": "male",
164            "status": "released",
165            "strain_background": "WSB/EiJ (WSB)",
166            "taxa": "Mus musculus"
167        },
168        {
169            "@id": "/rodent-donors/IGVFDO8958JQIY/",
170            "accession": "IGVFDO8958JQIY",
171            "aliases": [
172                "ali-mortazavi:047_NZOJ_10M"
173            ],
174            "sex": "male",
175            "status": "released",
176            "strain_background": "NZO/H1LtJ (NZO)",
177            "taxa": "Mus musculus"
178        },
179        {
180            "@id": "/rodent-donors/IGVFDO5523UFUN/",
181            "accession": "IGVFDO5523UFUN",
182            "aliases": [
183                "ali-mortazavi:070_NODJ_10F"
184            ],
185            "sex": "female",
186            "status": "released",
187            "strain_background": "NOD/ShiLtJ (NOD)",
188            "taxa": "Mus musculus"
189        },
190        {
191            "@id": "/rodent-donors/IGVFDO3207TERA/",
192            "accession": "IGVFDO3207TERA",
193            "aliases": [
194                "ali-mortazavi:086_CASTJ_10F"
195            ],
196            "sex": "female",
197            "status": "released",
198            "strain_background": "CAST/EiJ (CAST)",
199            "taxa": "Mus musculus"
200        },
201        {
202            "@id": "/rodent-donors/IGVFDO7062NBTQ/",
203            "accession": "IGVFDO7062NBTQ",
204            "aliases": [
205                "ali-mortazavi:079_PWKJ_10M"
206            ],
207            "sex": "male",
208            "status": "released",
209            "strain_background": "PWK/PhJ (PWK)",
210            "taxa": "Mus musculus"
211        },
212        {
213            "@id": "/rodent-donors/IGVFDO3603MEIO/",
214            "accession": "IGVFDO3603MEIO",
215            "aliases": [
216                "ali-mortazavi:084_PWKJ_10F"
217            ],
218            "sex": "female",
219            "status": "released",
220            "strain_background": "PWK/PhJ (PWK)",
221            "taxa": "Mus musculus"
222        },
223        {
224            "@id": "/rodent-donors/IGVFDO6219LVKW/",
225            "accession": "IGVFDO6219LVKW",
226            "aliases": [
227                "ali-mortazavi:032_AJ_10F"
228            ],
229            "sex": "female",
230            "status": "released",
231            "strain_background": "A/J (AJ)",
232            "taxa": "Mus musculus"
233        },
234        {
235            "@id": "/rodent-donors/IGVFDO2831PZHE/",
236            "accession": "IGVFDO2831PZHE",
237            "aliases": [
238                "ali-mortazavi:077_PWKJ_10M"
239            ],
240            "sex": "male",
241            "status": "released",
242            "strain_background": "PWK/PhJ (PWK)",
243            "taxa": "Mus musculus"
244        },
245        {
246            "@id": "/rodent-donors/IGVFDO8152XDDC/",
247            "accession": "IGVFDO8152XDDC",
248            "aliases": [
249                "ali-mortazavi:090_CASTJ_10F"
250            ],
251            "sex": "female",
252            "status": "released",
253            "strain_background": "CAST/EiJ (CAST)",
254            "taxa": "Mus musculus"
255        },
256        {
257            "@id": "/rodent-donors/IGVFDO2301HIUQ/",
258            "accession": "IGVFDO2301HIUQ",
259            "aliases": [
260                "ali-mortazavi:067_NODJ_10M"
261            ],
262            "sex": "male",
263            "status": "released",
264            "strain_background": "NOD/ShiLtJ (NOD)",
265            "taxa": "Mus musculus"
266        },
267        {
268            "@id": "/rodent-donors/IGVFDO0853BCOL/",
269            "accession": "IGVFDO0853BCOL",
270            "aliases": [
271                "ali-mortazavi:058_WSBJ_10F"
272            ],
273            "sex": "female",
274            "status": "released",
275            "strain_background": "WSB/EiJ (WSB)",
276            "taxa": "Mus musculus"
277        },
278        {
279            "@id": "/rodent-donors/IGVFDO1643VEDI/",
280            "accession": "IGVFDO1643VEDI",
281            "aliases": [
282                "ali-mortazavi:019_B6J_10M"
283            ],
284            "sex": "male",
285            "status": "released",
286            "strain_background": "C57BL/6J (B6)",
287            "taxa": "Mus musculus"
288        },
289        {
290            "@id": "/rodent-donors/IGVFDO9340WGNV/",
291            "accession": "IGVFDO9340WGNV",
292            "aliases": [
293                "ali-mortazavi:037_129S1J_10M"
294            ],
295            "sex": "male",
296            "status": "released",
297            "strain_background": "129S1/SvImJ (129)",
298            "taxa": "Mus musculus"
299        },
300        {
301            "@id": "/rodent-donors/IGVFDO0624KKTV/",
302            "accession": "IGVFDO0624KKTV",
303            "aliases": [
304                "ali-mortazavi:030_AJ_10F"
305            ],
306            "sex": "female",
307            "status": "released",
308            "strain_background": "A/J (AJ)",
309            "taxa": "Mus musculus"
310        },
311        {
312            "@id": "/rodent-donors/IGVFDO7255VZBN/",
313            "accession": "IGVFDO7255VZBN",
314            "aliases": [
315                "ali-mortazavi:062_WSBJ_10F"
316            ],
317            "sex": "female",
318            "status": "released",
319            "strain_background": "WSB/EiJ (WSB)",
320            "taxa": "Mus musculus"
321        },
322        {
323            "@id": "/rodent-donors/IGVFDO0681EHNP/",
324            "accession": "IGVFDO0681EHNP",
325            "aliases": [
326                "ali-mortazavi:052_NZOJ_10F"
327            ],
328            "sex": "female",
329            "status": "released",
330            "strain_background": "NZO/H1LtJ (NZO)",
331            "taxa": "Mus musculus"
332        },
333        {
334            "@id": "/rodent-donors/IGVFDO4788BIQB/",
335            "accession": "IGVFDO4788BIQB",
336            "aliases": [
337                "ali-mortazavi:020_B6J_10F"
338            ],
339            "sex": "female",
340            "status": "released",
341            "strain_background": "C57BL/6J (B6)",
342            "taxa": "Mus musculus"
343        },
344        {
345            "@id": "/rodent-donors/IGVFDO2319OUEC/",
346            "accession": "IGVFDO2319OUEC",
347            "aliases": [
348                "ali-mortazavi:045_129S1J_10M"
349            ],
350            "sex": "male",
351            "status": "released",
352            "strain_background": "129S1/SvImJ (129)",
353            "taxa": "Mus musculus"
354        },
355        {
356            "@id": "/rodent-donors/IGVFDO5872DFML/",
357            "accession": "IGVFDO5872DFML",
358            "aliases": [
359                "ali-mortazavi:094_CASTJ_10F"
360            ],
361            "sex": "female",
362            "status": "released",
363            "strain_background": "CAST/EiJ (CAST)",
364            "taxa": "Mus musculus"
365        },
366        {
367            "@id": "/rodent-donors/IGVFDO7254QNQZ/",
368            "accession": "IGVFDO7254QNQZ",
369            "aliases": [
370                "ali-mortazavi:031_AJ_10M"
371            ],
372            "sex": "male",
373            "status": "released",
374            "strain_background": "A/J (AJ)",
375            "taxa": "Mus musculus"
376        },
377        {
378            "@id": "/rodent-donors/IGVFDO7951JDSP/",
379            "accession": "IGVFDO7951JDSP",
380            "aliases": [
381                "ali-mortazavi:026_AJ_10F"
382            ],
383            "sex": "female",
384            "status": "released",
385            "strain_background": "A/J (AJ)",
386            "taxa": "Mus musculus"
387        },
388        {
389            "@id": "/rodent-donors/IGVFDO9374WXKK/",
390            "accession": "IGVFDO9374WXKK",
391            "aliases": [
392                "ali-mortazavi:028_AJ_10F"
393            ],
394            "sex": "female",
395            "status": "released",
396            "strain_background": "A/J (AJ)",
397            "taxa": "Mus musculus"
398        },
399        {
400            "@id": "/rodent-donors/IGVFDO9890MXGN/",
401            "accession": "IGVFDO9890MXGN",
402            "aliases": [
403                "ali-mortazavi:068_NODJ_10F"
404            ],
405            "sex": "female",
406            "status": "released",
407            "strain_background": "NOD/ShiLtJ (NOD)",
408            "taxa": "Mus musculus"
409        },
410        {
411            "@id": "/rodent-donors/IGVFDO3762EAWT/",
412            "accession": "IGVFDO3762EAWT",
413            "aliases": [
414                "ali-mortazavi:076_PWKJ_10F"
415            ],
416            "sex": "female",
417            "status": "released",
418            "strain_background": "PWK/PhJ (PWK)",
419            "taxa": "Mus musculus"
420        },
421        {
422            "@id": "/rodent-donors/IGVFDO0751WQHI/",
423            "accession": "IGVFDO0751WQHI",
424            "aliases": [
425                "ali-mortazavi:080_PWKJ_10F"
426            ],
427            "sex": "female",
428            "status": "released",
429            "strain_background": "PWK/PhJ (PWK)",
430            "taxa": "Mus musculus"
431        },
432        {
433            "@id": "/rodent-donors/IGVFDO5539RLXJ/",
434            "accession": "IGVFDO5539RLXJ",
435            "aliases": [
436                "ali-mortazavi:029_AJ_10M"
437            ],
438            "sex": "male",
439            "status": "released",
440            "strain_background": "A/J (AJ)",
441            "taxa": "Mus musculus"
442        },
443        {
444            "@id": "/rodent-donors/IGVFDO7957DMLJ/",
445            "accession": "IGVFDO7957DMLJ",
446            "aliases": [
447                "ali-mortazavi:033_AJ_10M"
448            ],
449            "sex": "male",
450            "status": "released",
451            "strain_background": "A/J (AJ)",
452            "taxa": "Mus musculus"
453        },
454        {
455            "@id": "/rodent-donors/IGVFDO6112GRYR/",
456            "accession": "IGVFDO6112GRYR",
457            "aliases": [
458                "ali-mortazavi:059_WSBJ_10M"
459            ],
460            "sex": "male",
461            "status": "released",
462            "strain_background": "WSB/EiJ (WSB)",
463            "taxa": "Mus musculus"
464        },
465        {
466            "@id": "/rodent-donors/IGVFDO2292YGGE/",
467            "accession": "IGVFDO2292YGGE",
468            "aliases": [
469                "ali-mortazavi:049_NZOJ_10M"
470            ],
471            "sex": "male",
472            "status": "released",
473            "strain_background": "NZO/H1LtJ (NZO)",
474            "taxa": "Mus musculus"
475        },
476        {
477            "@id": "/rodent-donors/IGVFDO7610XXRR/",
478            "accession": "IGVFDO7610XXRR",
479            "aliases": [
480                "ali-mortazavi:072_NODJ_10F"
481            ],
482            "sex": "female",
483            "status": "released",
484            "strain_background": "NOD/ShiLtJ (NOD)",
485            "taxa": "Mus musculus"
486        },
487        {
488            "@id": "/rodent-donors/IGVFDO9199TPBC/",
489            "accession": "IGVFDO9199TPBC",
490            "aliases": [
491                "ali-mortazavi:071_NODJ_10M"
492            ],
493            "sex": "male",
494            "status": "released",
495            "strain_background": "NOD/ShiLtJ (NOD)",
496            "taxa": "Mus musculus"
497        },
498        {
499            "@id": "/rodent-donors/IGVFDO1452VDIT/",
500            "accession": "IGVFDO1452VDIT",
501            "aliases": [
502                "ali-mortazavi:035_AJ_10M"
503            ],
504            "sex": "male",
505            "status": "released",
506            "strain_background": "A/J (AJ)",
507            "taxa": "Mus musculus"
508        },
509        {
510            "@id": "/rodent-donors/IGVFDO4707SGWM/",
511            "accession": "IGVFDO4707SGWM",
512            "aliases": [
513                "ali-mortazavi:051_NZOJ_10M"
514            ],
515            "sex": "male",
516            "status": "released",
517            "strain_background": "NZO/H1LtJ (NZO)",
518            "taxa": "Mus musculus"
519        },
520        {
521            "@id": "/rodent-donors/IGVFDO5258MBVH/",
522            "accession": "IGVFDO5258MBVH",
523            "aliases": [
524                "ali-mortazavi:040_129S1J_10F"
525            ],
526            "sex": "female",
527            "status": "released",
528            "strain_background": "129S1/SvImJ (129)",
529            "taxa": "Mus musculus"
530        },
531        {
532            "@id": "/rodent-donors/IGVFDO2106EEWB/",
533            "accession": "IGVFDO2106EEWB",
534            "aliases": [
535                "ali-mortazavi:078_PWKJ_10F"
536            ],
537            "sex": "female",
538            "status": "released",
539            "strain_background": "PWK/PhJ (PWK)",
540            "taxa": "Mus musculus"
541        },
542        {
543            "@id": "/rodent-donors/IGVFDO9510ILZG/",
544            "accession": "IGVFDO9510ILZG",
545            "aliases": [
546                "ali-mortazavi:053_NZOJ_10M"
547            ],
548            "sex": "male",
549            "status": "released",
550            "strain_background": "NZO/H1LtJ (NZO)",
551            "taxa": "Mus musculus"
552        },
553        {
554            "@id": "/rodent-donors/IGVFDO2645GUSC/",
555            "accession": "IGVFDO2645GUSC",
556            "aliases": [
557                "ali-mortazavi:060_WSBJ_10F"
558            ],
559            "sex": "female",
560            "status": "released",
561            "strain_background": "WSB/EiJ (WSB)",
562            "taxa": "Mus musculus"
563        },
564        {
565            "@id": "/rodent-donors/IGVFDO0813DZTW/",
566            "accession": "IGVFDO0813DZTW",
567            "aliases": [
568                "ali-mortazavi:069_NODJ_10M"
569            ],
570            "sex": "male",
571            "status": "released",
572            "strain_background": "NOD/ShiLtJ (NOD)",
573            "taxa": "Mus musculus"
574        },
575        {
576            "@id": "/rodent-donors/IGVFDO9202WGJZ/",
577            "accession": "IGVFDO9202WGJZ",
578            "aliases": [
579                "ali-mortazavi:085_PWKJ_10M"
580            ],
581            "sex": "male",
582            "status": "released",
583            "strain_background": "PWK/PhJ (PWK)",
584            "taxa": "Mus musculus"
585        },
586        {
587            "@id": "/rodent-donors/IGVFDO1477BPVO/",
588            "accession": "IGVFDO1477BPVO",
589            "aliases": [
590                "ali-mortazavi:088_CASTJ_10F"
591            ],
592            "sex": "female",
593            "status": "released",
594            "strain_background": "CAST/EiJ (CAST)",
595            "taxa": "Mus musculus"
596        },
597        {
598            "@id": "/rodent-donors/IGVFDO3640WUBU/",
599            "accession": "IGVFDO3640WUBU",
600            "aliases": [
601                "ali-mortazavi:066_NODJ_10F"
602            ],
603            "sex": "female",
604            "status": "released",
605            "strain_background": "NOD/ShiLtJ (NOD)",
606            "taxa": "Mus musculus"
607        },
608        {
609            "@id": "/rodent-donors/IGVFDO5737FRWD/",
610            "accession": "IGVFDO5737FRWD",
611            "aliases": [
612                "ali-mortazavi:081_PWKJ_10M"
613            ],
614            "sex": "male",
615            "status": "released",
616            "strain_background": "PWK/PhJ (PWK)",
617            "taxa": "Mus musculus"
618        },
619        {
620            "@id": "/rodent-donors/IGVFDO8904OIIT/",
621            "accession": "IGVFDO8904OIIT",
622            "aliases": [
623                "ali-mortazavi:044_129S1J_10F"
624            ],
625            "sex": "female",
626            "status": "released",
627            "strain_background": "129S1/SvImJ (129)",
628            "taxa": "Mus musculus"
629        },
630        {
631            "@id": "/rodent-donors/IGVFDO9142EUBJ/",
632            "accession": "IGVFDO9142EUBJ",
633            "aliases": [
634                "ali-mortazavi:096_WSBJ_10F"
635            ],
636            "sex": "female",
637            "status": "released",
638            "strain_background": "WSB/EiJ (WSB)",
639            "taxa": "Mus musculus"
640        },
641        {
642            "@id": "/rodent-donors/IGVFDO7007WBAX/",
643            "accession": "IGVFDO7007WBAX",
644            "aliases": [
645                "ali-mortazavi:016_B6J_10F"
646            ],
647            "sex": "female",
648            "status": "released",
649            "strain_background": "C57BL/6J (B6)",
650            "taxa": "Mus musculus"
651        },
652        {
653            "@id": "/rodent-donors/IGVFDO5183UZGS/",
654            "accession": "IGVFDO5183UZGS",
655            "aliases": [
656                "ali-mortazavi:021_B6J_10M"
657            ],
658            "sex": "male",
659            "status": "released",
660            "strain_background": "C57BL/6J (B6)",
661            "taxa": "Mus musculus"
662        },
663        {
664            "@id": "/rodent-donors/IGVFDO3655FKMR/",
665            "accession": "IGVFDO3655FKMR",
666            "aliases": [
667                "ali-mortazavi:025_B6J_10M"
668            ],
669            "sex": "male",
670            "status": "released",
671            "strain_background": "C57BL/6J (B6)",
672            "taxa": "Mus musculus"
673        },
674        {
675            "@id": "/rodent-donors/IGVFDO4725SNCJ/",
676            "accession": "IGVFDO4725SNCJ",
677            "aliases": [
678                "ali-mortazavi:017_B6J_10M"
679            ],
680            "sex": "male",
681            "status": "released",
682            "strain_background": "C57BL/6J (B6)",
683            "taxa": "Mus musculus"
684        },
685        {
686            "@id": "/rodent-donors/IGVFDO0026YRCR/",
687            "accession": "IGVFDO0026YRCR",
688            "aliases": [
689                "ali-mortazavi:018_B6J_10F"
690            ],
691            "sex": "female",
692            "status": "released",
693            "strain_background": "C57BL/6J (B6)",
694            "taxa": "Mus musculus"
695        },
696        {
697            "@id": "/rodent-donors/IGVFDO1744FDIX/",
698            "accession": "IGVFDO1744FDIX",
699            "aliases": [
700                "ali-mortazavi:036_129S1J_10F"
701            ],
702            "sex": "female",
703            "status": "released",
704            "strain_background": "129S1/SvImJ (129)",
705            "taxa": "Mus musculus"
706        },
707        {
708            "@id": "/rodent-donors/IGVFDO6614NNPY/",
709            "accession": "IGVFDO6614NNPY",
710            "aliases": [
711                "ali-mortazavi:089_CASTJ_10M"
712            ],
713            "sex": "male",
714            "status": "released",
715            "strain_background": "CAST/EiJ (CAST)",
716            "taxa": "Mus musculus"
717        },
718        {
719            "@id": "/rodent-donors/IGVFDO2753JGYS/",
720            "accession": "IGVFDO2753JGYS",
721            "aliases": [
722                "ali-mortazavi:095_CASTJ_10M"
723            ],
724            "sex": "male",
725            "status": "released",
726            "strain_background": "CAST/EiJ (CAST)",
727            "taxa": "Mus musculus"
728        },
729        {
730            "@id": "/rodent-donors/IGVFDO4469VYEZ/",
731            "accession": "IGVFDO4469VYEZ",
732            "aliases": [
733                "ali-mortazavi:073_NODJ_10M"
734            ],
735            "sex": "male",
736            "status": "released",
737            "strain_background": "NOD/ShiLtJ (NOD)",
738            "taxa": "Mus musculus"
739        },
740        {
741            "@id": "/rodent-donors/IGVFDO5085MJSP/",
742            "accession": "IGVFDO5085MJSP",
743            "aliases": [
744                "ali-mortazavi:048_NZOJ_10F"
745            ],
746            "sex": "female",
747            "status": "released",
748            "strain_background": "NZO/H1LtJ (NZO)",
749            "taxa": "Mus musculus"
750        },
751        {
752            "@id": "/rodent-donors/IGVFDO8322VYDU/",
753            "accession": "IGVFDO8322VYDU",
754            "aliases": [
755                "ali-mortazavi:093_CASTJ_10M"
756            ],
757            "sex": "male",
758            "status": "released",
759            "strain_background": "CAST/EiJ (CAST)",
760            "taxa": "Mus musculus"
761        },
762        {
763            "@id": "/rodent-donors/IGVFDO9560CEGZ/",
764            "accession": "IGVFDO9560CEGZ",
765            "aliases": [
766                "ali-mortazavi:061_WSBJ_10M"
767            ],
768            "sex": "male",
769            "status": "released",
770            "strain_background": "WSB/EiJ (WSB)",
771            "taxa": "Mus musculus"
772        },
773        {
774            "@id": "/rodent-donors/IGVFDO3662UKFW/",
775            "accession": "IGVFDO3662UKFW",
776            "aliases": [
777                "ali-mortazavi:087_CASTJ_10M"
778            ],
779            "sex": "male",
780            "status": "released",
781            "strain_background": "CAST/EiJ (CAST)",
782            "taxa": "Mus musculus"
783        },
784        {
785            "@id": "/rodent-donors/IGVFDO3534MDFF/",
786            "accession": "IGVFDO3534MDFF",
787            "aliases": [
788                "ali-mortazavi:046_NZOJ_10F"
789            ],
790            "sex": "female",
791            "status": "released",
792            "strain_background": "NZO/H1LtJ (NZO)",
793            "taxa": "Mus musculus"
794        }
795    ],
796    "externally_hosted": false,
797    "file_set_type": "experimental data",
798    "files": [
799        {
800            "@id": "/sequence-files/IGVFFI8684CUUL/",
801            "accession": "IGVFFI8684CUUL",
802            "content_type": "reads",
803            "controlled_access": false,
804            "creation_timestamp": "2023-10-10T19:09:41.256219+00:00",
805            "file_format": "fastq",
806            "file_size": 36386744119,
807            "href": "/sequence-files/IGVFFI8684CUUL/@@download/IGVFFI8684CUUL.fastq.gz",
808            "md5sum": "7a9f34946e3ce06bedb3757a2e4b08f2",
809            "s3_uri": "s3://igvf-files/2023/10/10/2a514e7b-9ac4-4d7a-bdd5-7aa18cd39ca1/IGVFFI8684CUUL.fastq.gz",
810            "sequencing_platform": {
811                "@id": "/platform-terms/EFO_0010963/",
812                "status": "released",
813                "term_name": "Illumina NextSeq 2000"
814            },
815            "status": "released",
816            "submitted_file_name": "igvf_008/nextseq/igvf_008_B08_D_next_N1_R1.fastq.gz",
817            "upload_status": "validated"
818        },
819        {
820            "@id": "/sequence-files/IGVFFI4563SUVT/",
821            "accession": "IGVFFI4563SUVT",
822            "content_type": "reads",
823            "controlled_access": false,
824            "creation_timestamp": "2023-10-10T20:45:40.313422+00:00",
825            "file_format": "fastq",
826            "file_size": 19919365740,
827            "href": "/sequence-files/IGVFFI4563SUVT/@@download/IGVFFI4563SUVT.fastq.gz",
828            "md5sum": "d1f33f3acb20b61d9e945f1a5d0cd38d",
829            "s3_uri": "s3://igvf-files/2023/10/10/8974d0c5-3b73-4d4d-b2b8-988bfa424733/IGVFFI4563SUVT.fastq.gz",
830            "sequencing_platform": {
831                "@id": "/platform-terms/EFO_0008637/",
832                "status": "released",
833                "term_name": "Illumina NovaSeq 6000"
834            },
835            "status": "released",
836            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L003_R1.fastq.gz",
837            "upload_status": "validated"
838        },
839        {
840            "@id": "/sequence-files/IGVFFI9921ZKGY/",
841            "accession": "IGVFFI9921ZKGY",
842            "content_type": "reads",
843            "controlled_access": false,
844            "creation_timestamp": "2023-10-10T20:59:25.329428+00:00",
845            "file_format": "fastq",
846            "file_size": 10994303057,
847            "href": "/sequence-files/IGVFFI9921ZKGY/@@download/IGVFFI9921ZKGY.fastq.gz",
848            "md5sum": "e69e4f765b87df6a3ce43c6461b6bd9b",
849            "s3_uri": "s3://igvf-files/2023/10/10/3e8f3dff-d9fe-4803-a7b2-01495ee7c823/IGVFFI9921ZKGY.fastq.gz",
850            "sequencing_platform": {
851                "@id": "/platform-terms/EFO_0008637/",
852                "status": "released",
853                "term_name": "Illumina NovaSeq 6000"
854            },
855            "status": "released",
856            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L003_R2.fastq.gz",
857            "upload_status": "validated"
858        },
859        {
860            "@id": "/sequence-files/IGVFFI7757UIZS/",
861            "accession": "IGVFFI7757UIZS",
862            "content_type": "reads",
863            "controlled_access": false,
864            "creation_timestamp": "2023-10-10T19:36:31.366768+00:00",
865            "file_format": "fastq",
866            "file_size": 22217687878,
867            "href": "/sequence-files/IGVFFI7757UIZS/@@download/IGVFFI7757UIZS.fastq.gz",
868            "md5sum": "7d2494233f0d9b04d47e6a84502a5310",
869            "s3_uri": "s3://igvf-files/2023/10/10/0c3c3751-c56e-4980-b3c9-90549dcf4da2/IGVFFI7757UIZS.fastq.gz",
870            "sequencing_platform": {
871                "@id": "/platform-terms/EFO_0010963/",
872                "status": "released",
873                "term_name": "Illumina NextSeq 2000"
874            },
875            "status": "released",
876            "submitted_file_name": "igvf_008/nextseq/igvf_008_B08_D_next_N1_R2.fastq.gz",
877            "upload_status": "validated"
878        },
879        {
880            "@id": "/sequence-files/IGVFFI6996FZLI/",
881            "accession": "IGVFFI6996FZLI",
882            "content_type": "reads",
883            "controlled_access": false,
884            "creation_timestamp": "2023-10-10T19:55:58.526334+00:00",
885            "file_format": "fastq",
886            "file_size": 19885925556,
887            "href": "/sequence-files/IGVFFI6996FZLI/@@download/IGVFFI6996FZLI.fastq.gz",
888            "md5sum": "b237afa07d6d792b9af6677e57fee811",
889            "s3_uri": "s3://igvf-files/2023/10/10/8bbf0e6a-1e89-49b1-aba3-e999bf9fb303/IGVFFI6996FZLI.fastq.gz",
890            "sequencing_platform": {
891                "@id": "/platform-terms/EFO_0008637/",
892                "status": "released",
893                "term_name": "Illumina NovaSeq 6000"
894            },
895            "status": "released",
896            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L001_R1.fastq.gz",
897            "upload_status": "validated"
898        },
899        {
900            "@id": "/sequence-files/IGVFFI5047AOXS/",
901            "accession": "IGVFFI5047AOXS",
902            "content_type": "reads",
903            "controlled_access": false,
904            "creation_timestamp": "2023-10-10T21:15:35.153050+00:00",
905            "file_format": "fastq",
906            "file_size": 10706902386,
907            "href": "/sequence-files/IGVFFI5047AOXS/@@download/IGVFFI5047AOXS.fastq.gz",
908            "md5sum": "ab9eada92e8e89dabaf4c1345d4f9c93",
909            "s3_uri": "s3://igvf-files/2023/10/10/912bfa38-4b9a-4b63-a187-24fb1bfe979f/IGVFFI5047AOXS.fastq.gz",
910            "sequencing_platform": {
911                "@id": "/platform-terms/EFO_0008637/",
912                "status": "released",
913                "term_name": "Illumina NovaSeq 6000"
914            },
915            "status": "released",
916            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L004_R2.fastq.gz",
917            "upload_status": "validated"
918        },
919        {
920            "@id": "/sequence-files/IGVFFI4981AEYH/",
921            "accession": "IGVFFI4981AEYH",
922            "content_type": "reads",
923            "controlled_access": false,
924            "creation_timestamp": "2023-10-10T20:11:54.625820+00:00",
925            "file_format": "fastq",
926            "file_size": 10974370560,
927            "href": "/sequence-files/IGVFFI4981AEYH/@@download/IGVFFI4981AEYH.fastq.gz",
928            "md5sum": "c4700bfd375a5b31e85f2851b1446970",
929            "s3_uri": "s3://igvf-files/2023/10/10/2e61bf4b-1dc1-4e06-8504-881469c9664e/IGVFFI4981AEYH.fastq.gz",
930            "sequencing_platform": {
931                "@id": "/platform-terms/EFO_0008637/",
932                "status": "released",
933                "term_name": "Illumina NovaSeq 6000"
934            },
935            "status": "released",
936            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L001_R2.fastq.gz",
937            "upload_status": "validated"
938        },
939        {
940            "@id": "/sequence-files/IGVFFI2415SUFL/",
941            "accession": "IGVFFI2415SUFL",
942            "content_type": "reads",
943            "controlled_access": false,
944            "creation_timestamp": "2023-10-10T20:36:29.430381+00:00",
945            "file_format": "fastq",
946            "file_size": 10927563727,
947            "href": "/sequence-files/IGVFFI2415SUFL/@@download/IGVFFI2415SUFL.fastq.gz",
948            "md5sum": "91073f62281850475f0366c8fe4ca86b",
949            "s3_uri": "s3://igvf-files/2023/10/10/397feada-a2a7-489d-a64d-059d171cc13d/IGVFFI2415SUFL.fastq.gz",
950            "sequencing_platform": {
951                "@id": "/platform-terms/EFO_0008637/",
952                "status": "released",
953                "term_name": "Illumina NovaSeq 6000"
954            },
955            "status": "released",
956            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L002_R2.fastq.gz",
957            "upload_status": "validated"
958        },
959        {
960            "@id": "/sequence-files/IGVFFI9143PWNW/",
961            "accession": "IGVFFI9143PWNW",
962            "content_type": "reads",
963            "controlled_access": false,
964            "creation_timestamp": "2023-10-10T21:05:11.820462+00:00",
965            "file_format": "fastq",
966            "file_size": 19195981238,
967            "href": "/sequence-files/IGVFFI9143PWNW/@@download/IGVFFI9143PWNW.fastq.gz",
968            "md5sum": "55b9084194ac9e77c85ed20c6a641483",
969            "s3_uri": "s3://igvf-files/2023/10/10/c3d705ab-899c-4952-bb99-390adaa19e9c/IGVFFI9143PWNW.fastq.gz",
970            "sequencing_platform": {
971                "@id": "/platform-terms/EFO_0008637/",
972                "status": "released",
973                "term_name": "Illumina NovaSeq 6000"
974            },
975            "status": "released",
976            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L004_R1.fastq.gz",
977            "upload_status": "validated"
978        },
979        {
980            "@id": "/sequence-files/IGVFFI1656PGSH/",
981            "accession": "IGVFFI1656PGSH",
982            "content_type": "reads",
983            "controlled_access": false,
984            "creation_timestamp": "2023-10-10T20:20:37.412694+00:00",
985            "file_format": "fastq",
986            "file_size": 19720307748,
987            "href": "/sequence-files/IGVFFI1656PGSH/@@download/IGVFFI1656PGSH.fastq.gz",
988            "md5sum": "ac6e141c11eec7f4c208fb1be83fbb38",
989            "s3_uri": "s3://igvf-files/2023/10/10/800f774d-6f75-4629-bdd2-aa80ecfff67f/IGVFFI1656PGSH.fastq.gz",
990            "sequencing_platform": {
991                "@id": "/platform-terms/EFO_0008637/",
992                "status": "released",
993                "term_name": "Illumina NovaSeq 6000"
994            },
995            "status": "released",
996            "submitted_file_name": "igvf_008/nova1/igvf_008_B08_D_nova_N1_L002_R1.fastq.gz",
997            "upload_status": "validated"
998        },
999        {
1000            "@id": "/configuration-files/IGVFFI1527ZAMX/",
1001            "accession": "IGVFFI1527ZAMX",
1002            "content_type": "seqspec",
1003            "creation_timestamp": "2024-09-18T17:11:57.505505+00:00",
1004            "file_format": "yaml",
1005            "file_size": 1352,
1006            "href": "/configuration-files/IGVFFI1527ZAMX/@@download/IGVFFI1527ZAMX.yaml.gz",
1007            "md5sum": "8346e7ddb48b203f26b2e68d7b2b222d",
1008            "s3_uri": "s3://igvf-files/2024/09/18/c88d004f-a430-47c4-9655-934f6246e1b4/IGVFFI1527ZAMX.yaml.gz",
1009            "status": "released",
1010            "upload_status": "validated"
1011        },
1012        {
1013            "@id": "/configuration-files/IGVFFI7741KVVJ/",
1014            "accession": "IGVFFI7741KVVJ",
1015            "content_type": "seqspec",
1016            "creation_timestamp": "2024-09-18T17:11:58.912679+00:00",
1017            "file_format": "yaml",
1018            "file_size": 1355,
1019            "href": "/configuration-files/IGVFFI7741KVVJ/@@download/IGVFFI7741KVVJ.yaml.gz",
1020            "md5sum": "d77b9f25821c63ab91e895f9122390b6",
1021            "s3_uri": "s3://igvf-files/2024/09/18/843a7469-2758-4990-b12d-3c19d77787b2/IGVFFI7741KVVJ.yaml.gz",
1022            "status": "released",
1023            "upload_status": "validated"
1024        },
1025        {
1026            "@id": "/configuration-files/IGVFFI2495ZMVG/",
1027            "accession": "IGVFFI2495ZMVG",
1028            "content_type": "seqspec",
1029            "creation_timestamp": "2024-09-18T17:11:56.250291+00:00",
1030            "file_format": "yaml",
1031            "file_size": 1354,
1032            "href": "/configuration-files/IGVFFI2495ZMVG/@@download/IGVFFI2495ZMVG.yaml.gz",
1033            "md5sum": "a1396e06620c744ed23a73c2e660206d",
1034            "s3_uri": "s3://igvf-files/2024/09/18/29ede514-4507-49ac-8098-673ada5d7c5d/IGVFFI2495ZMVG.yaml.gz",
1035            "status": "released",
1036            "upload_status": "validated"
1037        },
1038        {
1039            "@id": "/configuration-files/IGVFFI0143PTLD/",
1040            "accession": "IGVFFI0143PTLD",
1041            "content_type": "seqspec",
1042            "creation_timestamp": "2024-09-18T17:12:00.364926+00:00",
1043            "file_format": "yaml",
1044            "file_size": 1351,
1045            "href": "/configuration-files/IGVFFI0143PTLD/@@download/IGVFFI0143PTLD.yaml.gz",
1046            "md5sum": "877ec69fc23b4828be20646c17ab1b1c",
1047            "s3_uri": "s3://igvf-files/2024/09/18/dd6433e4-6bb5-4bc9-829a-295994216d66/IGVFFI0143PTLD.yaml.gz",
1048            "status": "released",
1049            "upload_status": "validated"
1050        },
1051        {
1052            "@id": "/configuration-files/IGVFFI6383QDJG/",
1053            "accession": "IGVFFI6383QDJG",
1054            "content_type": "seqspec",
1055            "creation_timestamp": "2024-09-18T17:11:54.959307+00:00",
1056            "file_format": "yaml",
1057            "file_size": 1354,
1058            "href": "/configuration-files/IGVFFI6383QDJG/@@download/IGVFFI6383QDJG.yaml.gz",
1059            "md5sum": "8726d79694822730a9ba88fe05cafde6",
1060            "s3_uri": "s3://igvf-files/2024/09/18/a9863e45-1284-4ee6-9083-f0e9cbf7b453/IGVFFI6383QDJG.yaml.gz",
1061            "status": "released",
1062            "upload_status": "validated"
1063        }
1064    ],
1065    "input_for": [
1066        "/analysis-sets/IGVFDS5334AKVB/"
1067    ],
1068    "lab": {
1069        "@id": "/labs/ali-mortazavi/",
1070        "title": "Ali Mortazavi, UCI"
1071    },
1072    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
1073    "onlist_files": [
1074        "/tabular-files/IGVFFI2591OFQO/",
1075        "/tabular-files/IGVFFI1138MCVX/"
1076    ],
1077    "onlist_method": "multi",
1078    "preferred_assay_title": "Parse SPLiT-seq",
1079    "protocols": [
1080        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-81wgbxzdylpk/v2",
1081        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-36wgq3e3ylk5/v1",
1082        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-5qpvo3837v4o/v1",
1083        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
1084        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
1085    ],
1086    "release_timestamp": "2025-04-19T03:38:30.935456+00:00",
1087    "samples": [
1088        {
1089            "@id": "/multiplexed-samples/IGVFSM9312MNIK/",
1090            "@type": [
1091                "MultiplexedSample",
1092                "Sample",
1093                "Item"
1094            ],
1095            "accession": "IGVFSM9312MNIK",
1096            "aliases": [
1097                "ali-mortazavi:subpool_008_67G"
1098            ],
1099            "cellular_sub_pool": "008_67G",
1100            "classifications": [
1101                "tissue",
1102                "multiplexed sample"
1103            ],
1104            "disease_terms": [],
1105            "institutional_certificates": [],
1106            "modifications": [],
1107            "sample_terms": [
1108                {
1109                    "@id": "/sample-terms/UBERON_0000473/",
1110                    "@type": [
1111                        "SampleTerm",
1112                        "OntologyTerm",
1113                        "Item"
1114                    ],
1115                    "status": "released",
1116                    "summary": "testis",
1117                    "term_name": "testis"
1118                },
1119                {
1120                    "@id": "/sample-terms/UBERON_0000992/",
1121                    "@type": [
1122                        "SampleTerm",
1123                        "OntologyTerm",
1124                        "Item"
1125                    ],
1126                    "status": "released",
1127                    "summary": "ovary",
1128                    "term_name": "ovary"
1129                },
1130                {
1131                    "@id": "/sample-terms/UBERON_0000993/",
1132                    "@type": [
1133                        "SampleTerm",
1134                        "OntologyTerm",
1135                        "Item"
1136                    ],
1137                    "status": "released",
1138                    "summary": "oviduct",
1139                    "term_name": "oviduct"
1140                },
1141                {
1142                    "@id": "/sample-terms/UBERON_0001301/",
1143                    "@type": [
1144                        "SampleTerm",
1145                        "OntologyTerm",
1146                        "Item"
1147                    ],
1148                    "status": "released",
1149                    "summary": "epididymis",
1150                    "term_name": "epididymis"
1151                },
1152                {
1153                    "@id": "/sample-terms/UBERON_0002369/",
1154                    "@type": [
1155                        "SampleTerm",
1156                        "OntologyTerm",
1157                        "Item"
1158                    ],
1159                    "status": "released",
1160                    "summary": "adrenal gland",
1161                    "term_name": "adrenal gland"
1162                }
1163            ],
1164            "status": "released",
1165            "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
1166            "taxa": "Mus musculus",
1167            "treatments": []
1168        }
1169    ],
1170    "schema_version": "26",
1171    "sequencing_library_types": [
1172        "mRNA enriched"
1173    ],
1174    "status": "released",
1175    "strand_specificity": "5 prime to 3 prime",
1176    "submitted_by": {
1177        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
1178        "title": "Diane Trout"
1179    },
1180    "submitted_files_timestamp": "2023-10-10T19:09:41.256219+00:00",
1181    "summary": "Parse SPLiT-seq",
1182    "uuid": "2e3cbff2-ce88-434b-b069-bef45751a490"
1183}