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INDEXED
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MeasurementSet
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IGVFDS1493FGGS
IGVFDS1493FGGS
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X005_G8_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0953SQXG
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
H5TH7DSX5
4
3.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3012DHYF
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
H5TH7DSX5
4
5.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4360VOGL
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
H5TH7DSX5
4
5.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9100LPSY
fastq
reads
I1
1
Illumina NovaSeq 6000
H5TH7DSX5
4
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM5971KNFX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0180JQCL
igvf:corces_donor_BANN1344
female
Homo sapiens
IGVFDO1052TZWO
igvf:corces_donor_BANN1851
male
Homo sapiens
IGVFDO2127ZJPS
igvf:corces_donor_BANN1560
male
Homo sapiens
IGVFDO3628ZBBZ
igvf:corces_donor_BANN0348
male
Homo sapiens
IGVFDO5718REZU
igvf:corces_donor_BANN9926
female
Homo sapiens
IGVFDO6013FYCW
igvf:corces_donor_BANN0912
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7306YMGC
igvf:corces_donor_BANN0517
female
Homo sapiens
IGVFDO7732SCUF
igvf:corces_donor_BANN0351
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8965MWPW
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X005_G8_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF