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IGVFDS1480DIMC

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X044_G1_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
223JJTLT3
6
625 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223JJTLT3
8
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JJTLT3
8
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223JJTLT3
6
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JJTLT3
5
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223JJTLT3
5
631 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223JJTLT3
7
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JJTLT3
7
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223JJTLT3
5
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223JJTLT3
6
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1750
male
Homo sapiens
  • igvf:corces_donor_BANN1827
male
Homo sapiens
  • igvf:corces_donor_BANN1404
male
Homo sapiens
  • igvf:corces_donor_BANN0413
male
Homo sapiens
  • igvf:corces_donor_BANN1311
male
Homo sapiens
  • igvf:corces_donor_BANN1632
male
Homo sapiens
  • igvf:corces_donor_BANN1201
male
Homo sapiens
  • igvf:corces_donor_BANN1570
male
Homo sapiens
  • igvf:corces_donor_BANN0341
male
Homo sapiens
  • igvf:corces_donor_BANN1039
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X044_G1_RNA
Ryan Corces, Gladstone Institute UCSF