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INDEXED
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MeasurementSet
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IGVFDS1476FCGD
IGVFDS1476FCGD
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X009_G1_RNA
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI7388LCIJ
fastq
reads
R2
1
Read 2
Illumina NovaSeq 6000
H5THNDSX5
4
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8191CHCB
fastq
reads
I2
1
Illumina NovaSeq 6000
H5THNDSX5
4
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9308WNTD
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
H5THNDSX5
4
4.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9444MAEC
fastq
reads
I1
1
Illumina NovaSeq 6000
H5THNDSX5
4
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9375ZKWX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0565OSFT
igvf:corces_donor_BANN1805
male
Homo sapiens
IGVFDO1464XWYC
igvf:corces_donor_BANN1809
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO2127ZJPS
igvf:corces_donor_BANN1560
male
Homo sapiens
IGVFDO2848YHMH
igvf:corces_donor_BANN2038
male
Homo sapiens
IGVFDO3317CNEB
igvf:corces_donor_BANN1902
male
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO7306YMGC
igvf:corces_donor_BANN0517
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2827YRAB
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X009_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF