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IGVFDS1447ZIXP

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP012_G2_RNA

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
1
Read 1
223HCCLT3
5
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HCCLT3
8
561 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223HCCLT3
5
4.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
223HCCLT3
5
559 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HCCLT3
7
575 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223HCCLT3
6
4.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
223HCCLT3
8
540 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HCCLT3
8
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HCCLT3
7
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223HCCLT3
8
4.0 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples

Donors

16 items
Aliases
  • igvf:corces_donor_BANN1554
male
Homo sapiens
  • igvf:corces_donor_BANN1809
male
Homo sapiens
  • igvf:corces_donor_BANN1827
male
Homo sapiens
  • igvf:corces_donor_BANN2103
male
Homo sapiens
  • igvf:corces_donor_BANN1317
male
Homo sapiens
  • igvf:corces_donor_BANN1865
male
Homo sapiens
  • igvf:corces_donor_BANN1632
male
Homo sapiens
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN9926
female
Homo sapiens
  • igvf:corces_donor_BANN0912
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP012_G2_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF