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INDEXED
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MeasurementSet
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IGVFDS1443GIQX
IGVFDS1443GIQX
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 208)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 245
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1768PLGI
fastq
reads
R2
4291
Read 2
IGVFFI0592JIJT
Illumina NovaSeq 6000
H75F7DSX5
2.6 GB
Jason Buenrostro, Broad
validated
IGVFFI3475SVVG
fastq
reads
R1
4291
Read 1
IGVFFI0592JIJT
Illumina NovaSeq 6000
H75F7DSX5
5.9 GB
Jason Buenrostro, Broad
validated
IGVFFI7967QQNW
fastq
reads
I1
4291
Barcode index
IGVFFI0592JIJT
Illumina NovaSeq 6000
H75F7DSX5
2.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8598BUOK
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 208)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4445ONRZ
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 602
Jason Buenrostro, Broad