{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1440FXHP",
"aliases": [
"ali-mortazavi:003_67H_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000647](/sample-terms/NTR_0000647/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000647/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000751](/sample-terms/NTR_0000751/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000751/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000750](/sample-terms/NTR_0000750/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000750/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS1440FXHP](/measurement-sets/IGVFDS1440FXHP/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS1440FXHP/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1440FXHP](/measurement-sets/IGVFDS1440FXHP/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1440FXHP/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1440FXHP](/measurement-sets/IGVFDS1440FXHP/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1440FXHP/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM9608FEZN](/multiplexed-samples/IGVFSM9608FEZN/) has in progress subobject tabular file [IGVFFI4465NRTD](/tabular-files/IGVFFI4465NRTD/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9608FEZN/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM9608FEZN](/multiplexed-samples/IGVFSM9608FEZN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM9608FEZN/"
}
]
},
"award": {
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"component": "mapping",
"contact_pi": {
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"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-05T00:01:06.705362+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
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{
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],
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{
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],
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},
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{
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],
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},
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],
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{
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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},
{
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},
{
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},
{
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},
{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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],
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{
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{
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},
{
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{
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},
{
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},
{
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},
{
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
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],
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],
"input_for": [
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],
"lab": {
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"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
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"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
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],
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"cellular_sub_pool": "003_67H",
"classifications": [
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"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
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],
"status": "released",
"summary": "multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
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],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
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