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IGVFDS1427CODJ

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf18_10x1

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R1
1
Read 1
22FL7YLT4
1
22 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
22FL7YLT4
1
13 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22FL7YLT4
1
22 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22FL7YLT4
1
5.5 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Donors

6 items
Aliases
  • igvf:donor_of_HCT116
male
Homo sapiens
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
  • igvf:donor_of_teloHAEC
female
Homo sapiens
  • igvf:donor_of_IMR90
female
Homo sapiens
  • igvf:donor_of_MCF7
female
Homo sapiens
  • igvf:donor_of_SKNSH
female
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf18_analysis_set
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf18_10x1
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf18_10x1
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford