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INDEXED
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MeasurementSet
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IGVFDS1416HRTP
IGVFDS1416HRTP
released
Json view
File Set Type
experimental data
Summary
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Assay Term
massively parallel reporter assay
Sample Summaries
mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library
Construct Library Sets
IGVFDS7655GRFI
Reporter library targeting accessible genome regions in many genomic loci
Protocols
https://www.protocols.io/file/n92rb7r27.pdf
Aliases
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day12_reads
Publications
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1904JDAT
fastq
reads
R2
1
Illumina NextSeq 500
H5VLMBGXM
1
142 MB
Jay Shendure, UW
validated
IGVFFI4124HVSC
fastq
reads
R1
1
Illumina NextSeq 500
H5VLMBGXM
1
147 MB
Jay Shendure, UW
validated
IGVFFI7005RONU
fastq
reads
R3
1
Illumina NextSeq 500
H5VLMBGXM
1
163 MB
Jay Shendure, UW
validated
Samples
Donors
File Sets Using This Measurement Set as an Input
Auxiliary Datasets
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW