{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1396XIPC/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1396XIPC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS1396XIPC](/measurement-sets/IGVFDS1396XIPC/) has sequence file(s) [IGVFFI5958XAYH](/sequence-files/IGVFFI5958XAYH/), [IGVFFI7160KUNG](/sequence-files/IGVFFI7160KUNG/), [IGVFFI7303IABX](/sequence-files/IGVFFI7303IABX/), [IGVFFI8426ZHMW](/sequence-files/IGVFFI8426ZHMW/), [IGVFFI4049GRTH](/sequence-files/IGVFFI4049GRTH/), [IGVFFI3816GCXD](/sequence-files/IGVFFI3816GCXD/), [IGVFFI0197ZDDZ](/sequence-files/IGVFFI0197ZDDZ/), [IGVFFI4181IYRY](/sequence-files/IGVFFI4181IYRY/), [IGVFFI8493XOVH](/sequence-files/IGVFFI8493XOVH/), [IGVFFI7287TFKX](/sequence-files/IGVFFI7287TFKX/), [IGVFFI9281ZLNH](/sequence-files/IGVFFI9281ZLNH/), [IGVFFI8774MQWM](/sequence-files/IGVFFI8774MQWM/), [IGVFFI0276SFMS](/sequence-files/IGVFFI0276SFMS/), [IGVFFI1871WLJI](/sequence-files/IGVFFI1871WLJI/), [IGVFFI7196EBQD](/sequence-files/IGVFFI7196EBQD/), [IGVFFI0506YTCH](/sequence-files/IGVFFI0506YTCH/), [IGVFFI2038OPEA](/sequence-files/IGVFFI2038OPEA/), [IGVFFI8817ENHK](/sequence-files/IGVFFI8817ENHK/), [IGVFFI6857FDZJ](/sequence-files/IGVFFI6857FDZJ/), [IGVFFI5002RGSX](/sequence-files/IGVFFI5002RGSX/), [IGVFFI8187HKZX](/sequence-files/IGVFFI8187HKZX/), [IGVFFI5359EENI](/sequence-files/IGVFFI5359EENI/), [IGVFFI5623MHQH](/sequence-files/IGVFFI5623MHQH/), [IGVFFI6634CWVO](/sequence-files/IGVFFI6634CWVO/), [IGVFFI8480EMDE](/sequence-files/IGVFFI8480EMDE/), [IGVFFI1499NEDD](/sequence-files/IGVFFI1499NEDD/), [IGVFFI9129UAJH](/sequence-files/IGVFFI9129UAJH/), [IGVFFI1435KWRB](/sequence-files/IGVFFI1435KWRB/), [IGVFFI7348TUSQ](/sequence-files/IGVFFI7348TUSQ/), [IGVFFI8804QLRI](/sequence-files/IGVFFI8804QLRI/), [IGVFFI7702TBET](/sequence-files/IGVFFI7702TBET/), [IGVFFI3037MBXC](/sequence-files/IGVFFI3037MBXC/), [IGVFFI3033JQZS](/sequence-files/IGVFFI3033JQZS/), [IGVFFI8556NNND](/sequence-files/IGVFFI8556NNND/), [IGVFFI8572ZPBP](/sequence-files/IGVFFI8572ZPBP/), [IGVFFI5422MSQB](/sequence-files/IGVFFI5422MSQB/), [IGVFFI2041FHBO](/sequence-files/IGVFFI2041FHBO/), [IGVFFI3012UPRA](/sequence-files/IGVFFI3012UPRA/), [IGVFFI7808BINH](/sequence-files/IGVFFI7808BINH/), [IGVFFI9153FVUD](/sequence-files/IGVFFI9153FVUD/), [IGVFFI6195VDMM](/sequence-files/IGVFFI6195VDMM/), [IGVFFI9932CRAN](/sequence-files/IGVFFI9932CRAN/), [IGVFFI4120TGLK](/sequence-files/IGVFFI4120TGLK/), [IGVFFI6236KMOB](/sequence-files/IGVFFI6236KMOB/), [IGVFFI6909NJMF](/sequence-files/IGVFFI6909NJMF/), [IGVFFI8669FHFY](/sequence-files/IGVFFI8669FHFY/), [IGVFFI4731UJZD](/sequence-files/IGVFFI4731UJZD/), [IGVFFI7501XOGW](/sequence-files/IGVFFI7501XOGW/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS1396XIPC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1396XIPC](/measurement-sets/IGVFDS1396XIPC/) has sequence file(s): [IGVFFI5958XAYH](/sequence-files/IGVFFI5958XAYH/), [IGVFFI7160KUNG](/sequence-files/IGVFFI7160KUNG/), [IGVFFI7303IABX](/sequence-files/IGVFFI7303IABX/), [IGVFFI8426ZHMW](/sequence-files/IGVFFI8426ZHMW/), [IGVFFI4049GRTH](/sequence-files/IGVFFI4049GRTH/), [IGVFFI3816GCXD](/sequence-files/IGVFFI3816GCXD/), [IGVFFI0197ZDDZ](/sequence-files/IGVFFI0197ZDDZ/), [IGVFFI4181IYRY](/sequence-files/IGVFFI4181IYRY/), [IGVFFI8493XOVH](/sequence-files/IGVFFI8493XOVH/), [IGVFFI7287TFKX](/sequence-files/IGVFFI7287TFKX/), [IGVFFI9281ZLNH](/sequence-files/IGVFFI9281ZLNH/), [IGVFFI8774MQWM](/sequence-files/IGVFFI8774MQWM/), [IGVFFI0276SFMS](/sequence-files/IGVFFI0276SFMS/), [IGVFFI1871WLJI](/sequence-files/IGVFFI1871WLJI/), [IGVFFI7196EBQD](/sequence-files/IGVFFI7196EBQD/), [IGVFFI0506YTCH](/sequence-files/IGVFFI0506YTCH/), [IGVFFI2038OPEA](/sequence-files/IGVFFI2038OPEA/), [IGVFFI8817ENHK](/sequence-files/IGVFFI8817ENHK/), [IGVFFI6857FDZJ](/sequence-files/IGVFFI6857FDZJ/), [IGVFFI5002RGSX](/sequence-files/IGVFFI5002RGSX/), [IGVFFI8187HKZX](/sequence-files/IGVFFI8187HKZX/), [IGVFFI5359EENI](/sequence-files/IGVFFI5359EENI/), [IGVFFI5623MHQH](/sequence-files/IGVFFI5623MHQH/), [IGVFFI6634CWVO](/sequence-files/IGVFFI6634CWVO/), [IGVFFI8480EMDE](/sequence-files/IGVFFI8480EMDE/), [IGVFFI1499NEDD](/sequence-files/IGVFFI1499NEDD/), [IGVFFI9129UAJH](/sequence-files/IGVFFI9129UAJH/), [IGVFFI1435KWRB](/sequence-files/IGVFFI1435KWRB/), [IGVFFI7348TUSQ](/sequence-files/IGVFFI7348TUSQ/), [IGVFFI8804QLRI](/sequence-files/IGVFFI8804QLRI/), [IGVFFI7702TBET](/sequence-files/IGVFFI7702TBET/), [IGVFFI3037MBXC](/sequence-files/IGVFFI3037MBXC/), [IGVFFI3033JQZS](/sequence-files/IGVFFI3033JQZS/), [IGVFFI8556NNND](/sequence-files/IGVFFI8556NNND/), [IGVFFI8572ZPBP](/sequence-files/IGVFFI8572ZPBP/), [IGVFFI5422MSQB](/sequence-files/IGVFFI5422MSQB/), [IGVFFI2041FHBO](/sequence-files/IGVFFI2041FHBO/), [IGVFFI3012UPRA](/sequence-files/IGVFFI3012UPRA/), [IGVFFI7808BINH](/sequence-files/IGVFFI7808BINH/), [IGVFFI9153FVUD](/sequence-files/IGVFFI9153FVUD/), [IGVFFI6195VDMM](/sequence-files/IGVFFI6195VDMM/), [IGVFFI9932CRAN](/sequence-files/IGVFFI9932CRAN/), [IGVFFI4120TGLK](/sequence-files/IGVFFI4120TGLK/), [IGVFFI6236KMOB](/sequence-files/IGVFFI6236KMOB/), [IGVFFI6909NJMF](/sequence-files/IGVFFI6909NJMF/), [IGVFFI8669FHFY](/sequence-files/IGVFFI8669FHFY/), [IGVFFI4731UJZD](/sequence-files/IGVFFI4731UJZD/), [IGVFFI7501XOGW](/sequence-files/IGVFFI7501XOGW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1396XIPC/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS1396XIPC](/measurement-sets/IGVFDS1396XIPC/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS1396XIPC/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "preview"
}
],
"control_for": [],
"creation_timestamp": "2024-11-25T23:52:54.954181+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI5958XAYH/",
"accession": "IGVFFI5958XAYH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:43:03.398662+00:00",
"file_format": "fastq",
"file_size": 14734621,
"href": "/sequence-files/IGVFFI5958XAYH/@@download/IGVFFI5958XAYH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f2ab3b18-cacf-484b-ae0f-eb6c4ed42bcf/IGVFFI5958XAYH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_S548_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7160KUNG/",
"accession": "IGVFFI7160KUNG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:53:44.233142+00:00",
"file_format": "fastq",
"file_size": 15045509,
"href": "/sequence-files/IGVFFI7160KUNG/@@download/IGVFFI7160KUNG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0829f823-0544-41f7-a128-212d7a1c5965/IGVFFI7160KUNG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_S557_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7303IABX/",
"accession": "IGVFFI7303IABX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:41:29.437505+00:00",
"file_format": "fastq",
"file_size": 14566969,
"href": "/sequence-files/IGVFFI7303IABX/@@download/IGVFFI7303IABX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a9aaf591-fa84-4bf5-8316-c7d04b5934a7/IGVFFI7303IABX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_S547_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8426ZHMW/",
"accession": "IGVFFI8426ZHMW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:51:25.518458+00:00",
"file_format": "fastq",
"file_size": 14257956,
"href": "/sequence-files/IGVFFI8426ZHMW/@@download/IGVFFI8426ZHMW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/dfb8f6c8-4b3f-4ced-a637-4952ce17ea6b/IGVFFI8426ZHMW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_S555_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4049GRTH/",
"accession": "IGVFFI4049GRTH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:46:48.385540+00:00",
"file_format": "fastq",
"file_size": 14025423,
"href": "/sequence-files/IGVFFI4049GRTH/@@download/IGVFFI4049GRTH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/53db6a26-b170-402e-9f4a-991907fffa32/IGVFFI4049GRTH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_S551_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3816GCXD/",
"accession": "IGVFFI3816GCXD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:49:06.729770+00:00",
"file_format": "fastq",
"file_size": 14833246,
"href": "/sequence-files/IGVFFI3816GCXD/@@download/IGVFFI3816GCXD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d88a3831-6e81-4203-b13f-1b8d12868eaf/IGVFFI3816GCXD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_S553_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0197ZDDZ/",
"accession": "IGVFFI0197ZDDZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:50:16.970825+00:00",
"file_format": "fastq",
"file_size": 14318108,
"href": "/sequence-files/IGVFFI0197ZDDZ/@@download/IGVFFI0197ZDDZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/4187b305-6617-4340-8e18-93c7cae9a7dc/IGVFFI0197ZDDZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_S554_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4181IYRY/",
"accession": "IGVFFI4181IYRY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:52:35.209075+00:00",
"file_format": "fastq",
"file_size": 14965238,
"href": "/sequence-files/IGVFFI4181IYRY/@@download/IGVFFI4181IYRY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/54f43df1-92d5-4974-a082-60272f072311/IGVFFI4181IYRY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_S556_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8493XOVH/",
"accession": "IGVFFI8493XOVH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:44:29.829852+00:00",
"file_format": "fastq",
"file_size": 14142268,
"href": "/sequence-files/IGVFFI8493XOVH/@@download/IGVFFI8493XOVH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2e714e4f-29d7-4b6b-86a5-fd7cfe9e4c5c/IGVFFI8493XOVH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_S549_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7287TFKX/",
"accession": "IGVFFI7287TFKX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:45:39.379248+00:00",
"file_format": "fastq",
"file_size": 14084464,
"href": "/sequence-files/IGVFFI7287TFKX/@@download/IGVFFI7287TFKX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9fd1b47d-6b17-433b-9b3e-0e90d6f47c65/IGVFFI7287TFKX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_S550_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9281ZLNH/",
"accession": "IGVFFI9281ZLNH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:47:57.704025+00:00",
"file_format": "fastq",
"file_size": 14614883,
"href": "/sequence-files/IGVFFI9281ZLNH/@@download/IGVFFI9281ZLNH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/15b6d3a7-b40c-4ff5-9e2c-e6d6c8637ebd/IGVFFI9281ZLNH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_S552_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8774MQWM/",
"accession": "IGVFFI8774MQWM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:54:53.102243+00:00",
"file_format": "fastq",
"file_size": 13795854,
"href": "/sequence-files/IGVFFI8774MQWM/@@download/IGVFFI8774MQWM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d326dcd2-c1af-47db-b7a5-ac372b40bdb9/IGVFFI8774MQWM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_S558_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0276SFMS/",
"accession": "IGVFFI0276SFMS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:04:55.080622+00:00",
"file_format": "fastq",
"file_size": 16367019,
"href": "/sequence-files/IGVFFI0276SFMS/@@download/IGVFFI0276SFMS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/05154873-1e28-45e7-a857-e052ceaa7fdc/IGVFFI0276SFMS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_S551_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1871WLJI/",
"accession": "IGVFFI1871WLJI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:11:58.471474+00:00",
"file_format": "fastq",
"file_size": 16783091,
"href": "/sequence-files/IGVFFI1871WLJI/@@download/IGVFFI1871WLJI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b9b58b23-241f-406f-9c11-f5c842c84de4/IGVFFI1871WLJI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_S554_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7196EBQD/",
"accession": "IGVFFI7196EBQD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:21:20.929559+00:00",
"file_format": "fastq",
"file_size": 16276666,
"href": "/sequence-files/IGVFFI7196EBQD/@@download/IGVFFI7196EBQD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e30da00b-6c54-4e79-b289-6330a005aa91/IGVFFI7196EBQD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_S558_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0506YTCH/",
"accession": "IGVFFI0506YTCH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:00:25.360158+00:00",
"file_format": "fastq",
"file_size": 16657382,
"href": "/sequence-files/IGVFFI0506YTCH/@@download/IGVFFI0506YTCH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/297e98fb-8032-419e-933a-1c9004a8d290/IGVFFI0506YTCH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_S549_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2038OPEA/",
"accession": "IGVFFI2038OPEA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:14:23.657289+00:00",
"file_format": "fastq",
"file_size": 16698168,
"href": "/sequence-files/IGVFFI2038OPEA/@@download/IGVFFI2038OPEA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d8dc5af0-4b60-4f5f-af83-64e17e8e8d0c/IGVFFI2038OPEA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_S555_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8817ENHK/",
"accession": "IGVFFI8817ENHK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:19:00.353594+00:00",
"file_format": "fastq",
"file_size": 17489005,
"href": "/sequence-files/IGVFFI8817ENHK/@@download/IGVFFI8817ENHK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b2c4e108-131d-4a29-85da-7a6efbfd87c6/IGVFFI8817ENHK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_S557_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6857FDZJ/",
"accession": "IGVFFI6857FDZJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:09:36.380556+00:00",
"file_format": "fastq",
"file_size": 17458720,
"href": "/sequence-files/IGVFFI6857FDZJ/@@download/IGVFFI6857FDZJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f43570cb-f9f9-4f96-aff4-a1fe3756424a/IGVFFI6857FDZJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_S553_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5002RGSX/",
"accession": "IGVFFI5002RGSX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:16:42.529179+00:00",
"file_format": "fastq",
"file_size": 17390007,
"href": "/sequence-files/IGVFFI5002RGSX/@@download/IGVFFI5002RGSX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/68ced67e-0620-4d4f-aaf2-6ec40092646d/IGVFFI5002RGSX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_S556_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8187HKZX/",
"accession": "IGVFFI8187HKZX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:54:50.233281+00:00",
"file_format": "fastq",
"file_size": 16991422,
"href": "/sequence-files/IGVFFI8187HKZX/@@download/IGVFFI8187HKZX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b9f468bb-d779-496a-a90b-9067ff0e735f/IGVFFI8187HKZX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_S547_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5359EENI/",
"accession": "IGVFFI5359EENI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:57:31.084049+00:00",
"file_format": "fastq",
"file_size": 17088327,
"href": "/sequence-files/IGVFFI5359EENI/@@download/IGVFFI5359EENI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/09e2f327-226b-4f27-8136-dbf920bf21c3/IGVFFI5359EENI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_S548_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5623MHQH/",
"accession": "IGVFFI5623MHQH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:02:44.772612+00:00",
"file_format": "fastq",
"file_size": 16723379,
"href": "/sequence-files/IGVFFI5623MHQH/@@download/IGVFFI5623MHQH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ec4f8453-1fce-4858-98c7-80e5649ef154/IGVFFI5623MHQH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_S550_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6634CWVO/",
"accession": "IGVFFI6634CWVO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:04:07.214123+00:00",
"file_format": "fastq",
"file_size": 6443122,
"href": "/sequence-files/IGVFFI6634CWVO/@@download/IGVFFI6634CWVO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1c1040ef-8c45-4b0a-bf97-1c70ca9c625c/IGVFFI6634CWVO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_S554_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8480EMDE/",
"accession": "IGVFFI8480EMDE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:07:16.260120+00:00",
"file_format": "fastq",
"file_size": 17437074,
"href": "/sequence-files/IGVFFI8480EMDE/@@download/IGVFFI8480EMDE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/91f44795-005e-4e3f-bc2b-3dd9d2475f50/IGVFFI8480EMDE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_S552_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1499NEDD/",
"accession": "IGVFFI1499NEDD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:13:36.520904+00:00",
"file_format": "fastq",
"file_size": 6299426,
"href": "/sequence-files/IGVFFI1499NEDD/@@download/IGVFFI1499NEDD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6672affb-5d74-4c89-abbe-040ecc371a1b/IGVFFI1499NEDD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_S558_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9129UAJH/",
"accession": "IGVFFI9129UAJH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:59:22.344897+00:00",
"file_format": "fastq",
"file_size": 6703904,
"href": "/sequence-files/IGVFFI9129UAJH/@@download/IGVFFI9129UAJH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b7b32249-eea1-42bb-9d62-8bea9ea55628/IGVFFI9129UAJH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_S552_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1435KWRB/",
"accession": "IGVFFI1435KWRB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:06:29.181252+00:00",
"file_format": "fastq",
"file_size": 6186157,
"href": "/sequence-files/IGVFFI1435KWRB/@@download/IGVFFI1435KWRB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6c345616-c493-4f75-9af4-6ce1fe336a79/IGVFFI1435KWRB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_S555_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7348TUSQ/",
"accession": "IGVFFI7348TUSQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:01:48.026721+00:00",
"file_format": "fastq",
"file_size": 6394840,
"href": "/sequence-files/IGVFFI7348TUSQ/@@download/IGVFFI7348TUSQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/77d428e6-1fec-4c20-8c06-f5dba185d2eb/IGVFFI7348TUSQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_S553_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8804QLRI/",
"accession": "IGVFFI8804QLRI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:08:51.643450+00:00",
"file_format": "fastq",
"file_size": 6382122,
"href": "/sequence-files/IGVFFI8804QLRI/@@download/IGVFFI8804QLRI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ea1db0e3-0607-4465-9140-2c7a1e20108f/IGVFFI8804QLRI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_S556_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7702TBET/",
"accession": "IGVFFI7702TBET",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:11:14.000869+00:00",
"file_format": "fastq",
"file_size": 6330293,
"href": "/sequence-files/IGVFFI7702TBET/@@download/IGVFFI7702TBET.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6f23dc0d-4de4-4ca7-9096-6981abaeb346/IGVFFI7702TBET.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_S557_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3037MBXC/",
"accession": "IGVFFI3037MBXC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:54:44.591313+00:00",
"file_format": "fastq",
"file_size": 6612826,
"href": "/sequence-files/IGVFFI3037MBXC/@@download/IGVFFI3037MBXC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d317da9c-39ca-436f-93eb-b3a8802a0839/IGVFFI3037MBXC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_S550_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3033JQZS/",
"accession": "IGVFFI3033JQZS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:46:41.814012+00:00",
"file_format": "fastq",
"file_size": 6698633,
"href": "/sequence-files/IGVFFI3033JQZS/@@download/IGVFFI3033JQZS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/852867f1-66ed-4fb6-a663-c4b4d9397033/IGVFFI3033JQZS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_S547_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8556NNND/",
"accession": "IGVFFI8556NNND",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:49:22.920446+00:00",
"file_format": "fastq",
"file_size": 6361407,
"href": "/sequence-files/IGVFFI8556NNND/@@download/IGVFFI8556NNND.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d3b6ebe7-3e0b-4bb2-b899-8b03c1a24cc7/IGVFFI8556NNND.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_S548_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8572ZPBP/",
"accession": "IGVFFI8572ZPBP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:56:58.709190+00:00",
"file_format": "fastq",
"file_size": 6248451,
"href": "/sequence-files/IGVFFI8572ZPBP/@@download/IGVFFI8572ZPBP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d76eb7d5-afff-4e20-b783-b104f6ba685c/IGVFFI8572ZPBP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_S551_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5422MSQB/",
"accession": "IGVFFI5422MSQB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:52:22.407847+00:00",
"file_format": "fastq",
"file_size": 6596171,
"href": "/sequence-files/IGVFFI5422MSQB/@@download/IGVFFI5422MSQB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f279cfc3-cf03-484d-ab84-3ad5c9b78a63/IGVFFI5422MSQB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_S549_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2041FHBO/",
"accession": "IGVFFI2041FHBO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:10:53.239069+00:00",
"file_format": "fastq",
"file_size": 6558130,
"href": "/sequence-files/IGVFFI2041FHBO/@@download/IGVFFI2041FHBO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f96884b5-13f4-4ca8-a006-6778e923395e/IGVFFI2041FHBO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep12_S558_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3012UPRA/",
"accession": "IGVFFI3012UPRA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:58:46.841905+00:00",
"file_format": "fastq",
"file_size": 7148602,
"href": "/sequence-files/IGVFFI3012UPRA/@@download/IGVFFI3012UPRA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/509f40fa-0506-4b57-8adf-616aebc29c93/IGVFFI3012UPRA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep7_S553_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7808BINH/",
"accession": "IGVFFI7808BINH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:05:54.711533+00:00",
"file_format": "fastq",
"file_size": 7209802,
"href": "/sequence-files/IGVFFI7808BINH/@@download/IGVFFI7808BINH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/26a755c2-be06-46c8-8850-068b0739469b/IGVFFI7808BINH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep10_S556_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9153FVUD/",
"accession": "IGVFFI9153FVUD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:43:50.181202+00:00",
"file_format": "fastq",
"file_size": 6979681,
"href": "/sequence-files/IGVFFI9153FVUD/@@download/IGVFFI9153FVUD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/19e90d12-9442-4121-b897-b50752257ee1/IGVFFI9153FVUD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep1_S547_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6195VDMM/",
"accession": "IGVFFI6195VDMM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:49:36.386223+00:00",
"file_format": "fastq",
"file_size": 6851585,
"href": "/sequence-files/IGVFFI6195VDMM/@@download/IGVFFI6195VDMM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2bd5b476-5f4d-434e-84f2-b69ccbae4dec/IGVFFI6195VDMM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep3_S549_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9932CRAN/",
"accession": "IGVFFI9932CRAN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:51:49.523552+00:00",
"file_format": "fastq",
"file_size": 6803195,
"href": "/sequence-files/IGVFFI9932CRAN/@@download/IGVFFI9932CRAN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5b5e4f26-94d2-4c18-99e1-7101b219874e/IGVFFI9932CRAN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep4_S550_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4120TGLK/",
"accession": "IGVFFI4120TGLK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:01:14.057093+00:00",
"file_format": "fastq",
"file_size": 6956075,
"href": "/sequence-files/IGVFFI4120TGLK/@@download/IGVFFI4120TGLK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5b325b24-c681-430b-832e-e2de56ff3997/IGVFFI4120TGLK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep8_S554_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6236KMOB/",
"accession": "IGVFFI6236KMOB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:54:05.516131+00:00",
"file_format": "fastq",
"file_size": 6473685,
"href": "/sequence-files/IGVFFI6236KMOB/@@download/IGVFFI6236KMOB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/722ff0e6-898d-4a9d-b50a-b60a8d934fb6/IGVFFI6236KMOB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep5_S551_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6909NJMF/",
"accession": "IGVFFI6909NJMF",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:56:22.835166+00:00",
"file_format": "fastq",
"file_size": 6957899,
"href": "/sequence-files/IGVFFI6909NJMF/@@download/IGVFFI6909NJMF.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0cbb5427-c185-4d18-b182-d568ff61f680/IGVFFI6909NJMF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep6_S552_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8669FHFY/",
"accession": "IGVFFI8669FHFY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:03:32.797829+00:00",
"file_format": "fastq",
"file_size": 6881623,
"href": "/sequence-files/IGVFFI8669FHFY/@@download/IGVFFI8669FHFY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6afaa6f9-3dfd-4c42-a96a-7cc602daed8d/IGVFFI8669FHFY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep9_S555_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4731UJZD/",
"accession": "IGVFFI4731UJZD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:46:39.900007+00:00",
"file_format": "fastq",
"file_size": 6989540,
"href": "/sequence-files/IGVFFI4731UJZD/@@download/IGVFFI4731UJZD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/cf92e0cd-ecc7-491b-a531-c1fa47db28fe/IGVFFI4731UJZD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep2_S548_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7501XOGW/",
"accession": "IGVFFI7501XOGW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:08:19.588446+00:00",
"file_format": "fastq",
"file_size": 7192406,
"href": "/sequence-files/IGVFFI7501XOGW/@@download/IGVFFI7501XOGW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b540a6ac-5ace-4799-9e7b-3be61f9fc5c4/IGVFFI7501XOGW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinD-PCRrep11_S557_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4833ZRTZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4077CGNC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4077CGNC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS4955GEYO/",
"accession": "IGVFDS4955GEYO",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "preview",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-26T06:41:29.437505+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "86e7a45e-13f0-4cba-b924-949c1865d053"
}