{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"ali-mortazavi:012_13H_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM7128PWFB](/multiplexed-samples/IGVFSM7128PWFB/) has in progress subobject tabular file [IGVFFI7516EHMR](/tabular-files/IGVFFI7516EHMR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM7128PWFB/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM7128PWFB](/multiplexed-samples/IGVFSM7128PWFB/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM7128PWFB/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000750](/sample-terms/NTR_0000750/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000750/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS1381GERK](/measurement-sets/IGVFDS1381GERK/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS1381GERK/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1381GERK](/measurement-sets/IGVFDS1381GERK/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1381GERK/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1381GERK](/measurement-sets/IGVFDS1381GERK/) has in progress subobject tabular file [IGVFFI0924TKJO](/tabular-files/IGVFFI0924TKJO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1381GERK/"
}
]
},
"award": {
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"component": "mapping",
"contact_pi": {
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"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
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],
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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{
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],
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},
{
"@id": "/rodent-donors/IGVFDO7658MAGX/",
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],
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{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
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{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
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],
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}
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},
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{
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],
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],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
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"/tabular-files/IGVFFI1138MCVX/"
],
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"protocols": [
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"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-eq2lyj17rlx9/v1",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n2bvj3noplk5/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-dm6gp3zedvzp/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n92ldm8b8l5b/v2",
"https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T18:15:12.595356+00:00",
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{
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"Sample",
"Item"
],
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],
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"multiplexed sample"
],
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"institutional_certificates": [],
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"OntologyTerm",
"Item"
],
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},
{
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"@type": [
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"OntologyTerm",
"Item"
],
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"summary": "left hippocampal formation",
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{
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"Item"
],
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"summary": "pituitary gland",
"term_name": "pituitary gland"
},
{
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"OntologyTerm",
"Item"
],
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"term_name": "heart"
},
{
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"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
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"summary": "gastrocnemius",
"term_name": "gastrocnemius"
},
{
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "hypothalamus",
"term_name": "hypothalamus"
},
{
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"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "adrenal gland",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
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],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
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"title": "Diane Trout"
},
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"summary": "Parse SPLiT-seq",
"uuid": "fd388975-947a-4fff-915b-d3c2d138fd04"
}