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IGVFDS1333MBPK

released
File Set Type
experimental data
Summary
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
  • CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)
Protocols
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispri-gex-rep2
Publications

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
2
3
6.6 GB
Charles Gersbach, Duke
validated
fastq
reads
R1
2
4
6.6 GB
Charles Gersbach, Duke
validated
fastq
reads
R1
2
1
6.6 GB
Charles Gersbach, Duke
validated
fastq
reads
R1
2
2
6.6 GB
Charles Gersbach, Duke
validated
fastq
reads
R2
2
1
17 GB
Charles Gersbach, Duke
validated
fastq
reads
R2
2
3
16 GB
Charles Gersbach, Duke
validated
fastq
reads
R2
2
2
17 GB
Charles Gersbach, Duke
validated
fastq
reads
R2
2
4
17 GB
Charles Gersbach, Duke
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • charles-gersbach:cd8-tcells-donor-7
unspecified
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting transcription start sites in 24 genes

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
  • charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispri
Charles Gersbach, Duke

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
  • charles-gersbach:cd8-tcells-perturb-seq-crispri-grna-rep2
Charles Gersbach, Duke

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke