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IGVFDS1331MCPD

released
File Set Type
experimental data
Summary
Proliferation CRISPR cutting screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide
Assay Term
in vitro CRISPR screen assay
Sample Summaries
  • HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
Protocols
Aliases
daniel-bauer:ChrX_Screen_no_deaminase_day14_rep2_ms

Sequencing Results (Illumina)

2 items
Read Names
fastq
reads
R2
1
GAGT
105 MB
Daniel Bauer, HSCI
validated
fastq
reads
R1
1
GAGT
104 MB
Daniel Bauer, HSCI
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting phenotype-associated variants genome-wide

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Proliferation CRISPR base editing, cutting screen: guide quantifications, variant effects
  • daniel-bauer:chrX_mageck_analysis_set
Daniel Bauer, HSCI

Attribution

Award
HG012010
Principal Investigator(s)
Contact P.I.
Luca Pinello
Lab
Daniel Bauer, HSCI