{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1319XVLL/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1319XVLL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS1319XVLL](/measurement-sets/IGVFDS1319XVLL/) has sequence file(s) [IGVFFI6157RLIA](/sequence-files/IGVFFI6157RLIA/), [IGVFFI0416YRLS](/sequence-files/IGVFFI0416YRLS/), [IGVFFI1886CXGZ](/sequence-files/IGVFFI1886CXGZ/), [IGVFFI9419YLFW](/sequence-files/IGVFFI9419YLFW/), [IGVFFI1999EXLH](/sequence-files/IGVFFI1999EXLH/), [IGVFFI0425TAES](/sequence-files/IGVFFI0425TAES/), [IGVFFI7039BUWJ](/sequence-files/IGVFFI7039BUWJ/), [IGVFFI0950CPRT](/sequence-files/IGVFFI0950CPRT/), [IGVFFI2628GCOT](/sequence-files/IGVFFI2628GCOT/), [IGVFFI1546NHZH](/sequence-files/IGVFFI1546NHZH/), [IGVFFI7710LIFV](/sequence-files/IGVFFI7710LIFV/), [IGVFFI9674BACC](/sequence-files/IGVFFI9674BACC/), [IGVFFI6508GSWD](/sequence-files/IGVFFI6508GSWD/), [IGVFFI6180DGKA](/sequence-files/IGVFFI6180DGKA/), [IGVFFI9206AUFI](/sequence-files/IGVFFI9206AUFI/), [IGVFFI4044PBRP](/sequence-files/IGVFFI4044PBRP/), [IGVFFI7554YPPS](/sequence-files/IGVFFI7554YPPS/), [IGVFFI8777MXXY](/sequence-files/IGVFFI8777MXXY/), [IGVFFI9241FNZY](/sequence-files/IGVFFI9241FNZY/), [IGVFFI3503BPKN](/sequence-files/IGVFFI3503BPKN/), [IGVFFI0019XPES](/sequence-files/IGVFFI0019XPES/), [IGVFFI0576ECSI](/sequence-files/IGVFFI0576ECSI/), [IGVFFI8033WMRT](/sequence-files/IGVFFI8033WMRT/), [IGVFFI5873SDKS](/sequence-files/IGVFFI5873SDKS/), [IGVFFI9724EAAQ](/sequence-files/IGVFFI9724EAAQ/), [IGVFFI9492AZKJ](/sequence-files/IGVFFI9492AZKJ/), [IGVFFI2564NSJV](/sequence-files/IGVFFI2564NSJV/), [IGVFFI8009HURM](/sequence-files/IGVFFI8009HURM/), [IGVFFI6909ADER](/sequence-files/IGVFFI6909ADER/), [IGVFFI4092GCVZ](/sequence-files/IGVFFI4092GCVZ/), [IGVFFI5700GLSH](/sequence-files/IGVFFI5700GLSH/), [IGVFFI9956YVYV](/sequence-files/IGVFFI9956YVYV/), [IGVFFI3712MJHT](/sequence-files/IGVFFI3712MJHT/), [IGVFFI6519RCQL](/sequence-files/IGVFFI6519RCQL/), [IGVFFI2843CVQX](/sequence-files/IGVFFI2843CVQX/), [IGVFFI5396LVCV](/sequence-files/IGVFFI5396LVCV/), [IGVFFI3451KSGC](/sequence-files/IGVFFI3451KSGC/), [IGVFFI2873DIIR](/sequence-files/IGVFFI2873DIIR/), [IGVFFI9949DCGR](/sequence-files/IGVFFI9949DCGR/), [IGVFFI0464IKFP](/sequence-files/IGVFFI0464IKFP/), [IGVFFI3201AANW](/sequence-files/IGVFFI3201AANW/), [IGVFFI3189ONQJ](/sequence-files/IGVFFI3189ONQJ/), [IGVFFI7767YDDR](/sequence-files/IGVFFI7767YDDR/), [IGVFFI3962IEJM](/sequence-files/IGVFFI3962IEJM/), [IGVFFI6761LLIA](/sequence-files/IGVFFI6761LLIA/), [IGVFFI3435YJPI](/sequence-files/IGVFFI3435YJPI/), [IGVFFI9435OMZV](/sequence-files/IGVFFI9435OMZV/), [IGVFFI6700IZYS](/sequence-files/IGVFFI6700IZYS/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS1319XVLL/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1319XVLL](/measurement-sets/IGVFDS1319XVLL/) has sequence file(s): [IGVFFI6157RLIA](/sequence-files/IGVFFI6157RLIA/), [IGVFFI0416YRLS](/sequence-files/IGVFFI0416YRLS/), [IGVFFI1886CXGZ](/sequence-files/IGVFFI1886CXGZ/), [IGVFFI9419YLFW](/sequence-files/IGVFFI9419YLFW/), [IGVFFI1999EXLH](/sequence-files/IGVFFI1999EXLH/), [IGVFFI0425TAES](/sequence-files/IGVFFI0425TAES/), [IGVFFI7039BUWJ](/sequence-files/IGVFFI7039BUWJ/), [IGVFFI0950CPRT](/sequence-files/IGVFFI0950CPRT/), [IGVFFI2628GCOT](/sequence-files/IGVFFI2628GCOT/), [IGVFFI1546NHZH](/sequence-files/IGVFFI1546NHZH/), [IGVFFI7710LIFV](/sequence-files/IGVFFI7710LIFV/), [IGVFFI9674BACC](/sequence-files/IGVFFI9674BACC/), [IGVFFI6508GSWD](/sequence-files/IGVFFI6508GSWD/), [IGVFFI6180DGKA](/sequence-files/IGVFFI6180DGKA/), [IGVFFI9206AUFI](/sequence-files/IGVFFI9206AUFI/), [IGVFFI4044PBRP](/sequence-files/IGVFFI4044PBRP/), [IGVFFI7554YPPS](/sequence-files/IGVFFI7554YPPS/), [IGVFFI8777MXXY](/sequence-files/IGVFFI8777MXXY/), [IGVFFI9241FNZY](/sequence-files/IGVFFI9241FNZY/), [IGVFFI3503BPKN](/sequence-files/IGVFFI3503BPKN/), [IGVFFI0019XPES](/sequence-files/IGVFFI0019XPES/), [IGVFFI0576ECSI](/sequence-files/IGVFFI0576ECSI/), [IGVFFI8033WMRT](/sequence-files/IGVFFI8033WMRT/), [IGVFFI5873SDKS](/sequence-files/IGVFFI5873SDKS/), [IGVFFI9724EAAQ](/sequence-files/IGVFFI9724EAAQ/), [IGVFFI9492AZKJ](/sequence-files/IGVFFI9492AZKJ/), [IGVFFI2564NSJV](/sequence-files/IGVFFI2564NSJV/), [IGVFFI8009HURM](/sequence-files/IGVFFI8009HURM/), [IGVFFI6909ADER](/sequence-files/IGVFFI6909ADER/), [IGVFFI4092GCVZ](/sequence-files/IGVFFI4092GCVZ/), [IGVFFI5700GLSH](/sequence-files/IGVFFI5700GLSH/), [IGVFFI9956YVYV](/sequence-files/IGVFFI9956YVYV/), [IGVFFI3712MJHT](/sequence-files/IGVFFI3712MJHT/), [IGVFFI6519RCQL](/sequence-files/IGVFFI6519RCQL/), [IGVFFI2843CVQX](/sequence-files/IGVFFI2843CVQX/), [IGVFFI5396LVCV](/sequence-files/IGVFFI5396LVCV/), [IGVFFI3451KSGC](/sequence-files/IGVFFI3451KSGC/), [IGVFFI2873DIIR](/sequence-files/IGVFFI2873DIIR/), [IGVFFI9949DCGR](/sequence-files/IGVFFI9949DCGR/), [IGVFFI0464IKFP](/sequence-files/IGVFFI0464IKFP/), [IGVFFI3201AANW](/sequence-files/IGVFFI3201AANW/), [IGVFFI3189ONQJ](/sequence-files/IGVFFI3189ONQJ/), [IGVFFI7767YDDR](/sequence-files/IGVFFI7767YDDR/), [IGVFFI3962IEJM](/sequence-files/IGVFFI3962IEJM/), [IGVFFI6761LLIA](/sequence-files/IGVFFI6761LLIA/), [IGVFFI3435YJPI](/sequence-files/IGVFFI3435YJPI/), [IGVFFI9435OMZV](/sequence-files/IGVFFI9435OMZV/), [IGVFFI6700IZYS](/sequence-files/IGVFFI6700IZYS/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1319XVLL/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS1319XVLL](/measurement-sets/IGVFDS1319XVLL/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS1319XVLL/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "preview"
}
],
"control_for": [],
"creation_timestamp": "2024-11-25T23:52:26.064614+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI6157RLIA/",
"accession": "IGVFFI6157RLIA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:32:48.321840+00:00",
"file_format": "fastq",
"file_size": 14451531,
"href": "/sequence-files/IGVFFI6157RLIA/@@download/IGVFFI6157RLIA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c13ab147-01c0-4465-8b55-20b51c4b6615/IGVFFI6157RLIA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_S469_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0416YRLS/",
"accession": "IGVFFI0416YRLS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:39:02.715310+00:00",
"file_format": "fastq",
"file_size": 12946146,
"href": "/sequence-files/IGVFFI0416YRLS/@@download/IGVFFI0416YRLS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/59ded1f2-8401-4312-87ad-102f1a41c509/IGVFFI0416YRLS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_S474_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1886CXGZ/",
"accession": "IGVFFI1886CXGZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:29:18.431417+00:00",
"file_format": "fastq",
"file_size": 13969791,
"href": "/sequence-files/IGVFFI1886CXGZ/@@download/IGVFFI1886CXGZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/aa171ccc-366f-4d25-9bd8-99dab9fec46d/IGVFFI1886CXGZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_S466_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9419YLFW/",
"accession": "IGVFFI9419YLFW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:30:30.175509+00:00",
"file_format": "fastq",
"file_size": 13053684,
"href": "/sequence-files/IGVFFI9419YLFW/@@download/IGVFFI9419YLFW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0ceb8ded-496b-4b2b-9639-b0059297e5d9/IGVFFI9419YLFW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_S467_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1999EXLH/",
"accession": "IGVFFI1999EXLH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:33:58.605273+00:00",
"file_format": "fastq",
"file_size": 14118380,
"href": "/sequence-files/IGVFFI1999EXLH/@@download/IGVFFI1999EXLH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b6fe4bb5-27a1-4f00-a60b-eb810cfd1890/IGVFFI1999EXLH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_S470_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0425TAES/",
"accession": "IGVFFI0425TAES",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:26:40.670944+00:00",
"file_format": "fastq",
"file_size": 14221561,
"href": "/sequence-files/IGVFFI0425TAES/@@download/IGVFFI0425TAES.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/bd343531-470c-4435-a835-d3c4416ef912/IGVFFI0425TAES.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_S464_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7039BUWJ/",
"accession": "IGVFFI7039BUWJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:31:39.309956+00:00",
"file_format": "fastq",
"file_size": 14375868,
"href": "/sequence-files/IGVFFI7039BUWJ/@@download/IGVFFI7039BUWJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6b5d06bf-4156-4e28-b2ee-7b98ba9e9c01/IGVFFI7039BUWJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_S468_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0950CPRT/",
"accession": "IGVFFI0950CPRT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:37:44.899728+00:00",
"file_format": "fastq",
"file_size": 13271700,
"href": "/sequence-files/IGVFFI0950CPRT/@@download/IGVFFI0950CPRT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/8729e6e0-1936-4c4c-adff-86a30bfa3406/IGVFFI0950CPRT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_S473_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2628GCOT/",
"accession": "IGVFFI2628GCOT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:28:08.995698+00:00",
"file_format": "fastq",
"file_size": 15267780,
"href": "/sequence-files/IGVFFI2628GCOT/@@download/IGVFFI2628GCOT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/003b8f2b-d03e-47e7-a519-a56b7cdcfea4/IGVFFI2628GCOT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_S465_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1546NHZH/",
"accession": "IGVFFI1546NHZH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:25:15.129639+00:00",
"file_format": "fastq",
"file_size": 14853719,
"href": "/sequence-files/IGVFFI1546NHZH/@@download/IGVFFI1546NHZH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e834c3f5-0b6c-4e40-8bcd-506e99f69756/IGVFFI1546NHZH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_S463_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7710LIFV/",
"accession": "IGVFFI7710LIFV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:36:28.710594+00:00",
"file_format": "fastq",
"file_size": 13229146,
"href": "/sequence-files/IGVFFI7710LIFV/@@download/IGVFFI7710LIFV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ed52b8fc-9932-40c3-a686-c47dca8ccfb1/IGVFFI7710LIFV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_S472_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9674BACC/",
"accession": "IGVFFI9674BACC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:35:11.333179+00:00",
"file_format": "fastq",
"file_size": 13354384,
"href": "/sequence-files/IGVFFI9674BACC/@@download/IGVFFI9674BACC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/34a421d0-e70c-44f8-90e3-f7cbb79d920f/IGVFFI9674BACC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_S471_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6508GSWD/",
"accession": "IGVFFI6508GSWD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:41:38.374701+00:00",
"file_format": "fastq",
"file_size": 16613437,
"href": "/sequence-files/IGVFFI6508GSWD/@@download/IGVFFI6508GSWD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/da1cbd9b-8cbd-4f92-8817-a69ba6b471d9/IGVFFI6508GSWD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_S469_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6180DGKA/",
"accession": "IGVFFI6180DGKA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:49:12.076140+00:00",
"file_format": "fastq",
"file_size": 15334952,
"href": "/sequence-files/IGVFFI6180DGKA/@@download/IGVFFI6180DGKA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/35ad9797-b42c-46a6-9eb1-53fd541ad1e5/IGVFFI6180DGKA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_S473_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9206AUFI/",
"accession": "IGVFFI9206AUFI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:39:51.536183+00:00",
"file_format": "fastq",
"file_size": 16642757,
"href": "/sequence-files/IGVFFI9206AUFI/@@download/IGVFFI9206AUFI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/cc37da17-28c1-4039-bf32-113d69a5e486/IGVFFI9206AUFI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_S468_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4044PBRP/",
"accession": "IGVFFI4044PBRP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:36:28.859945+00:00",
"file_format": "fastq",
"file_size": 16249111,
"href": "/sequence-files/IGVFFI4044PBRP/@@download/IGVFFI4044PBRP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e75fa862-29e3-4bd9-a1d5-e608271070fb/IGVFFI4044PBRP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_S466_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7554YPPS/",
"accession": "IGVFFI7554YPPS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:30:58.726942+00:00",
"file_format": "fastq",
"file_size": 17175068,
"href": "/sequence-files/IGVFFI7554YPPS/@@download/IGVFFI7554YPPS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/82e72d25-017a-4d9e-b4f0-b9ab6088adc4/IGVFFI7554YPPS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_S463_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8777MXXY/",
"accession": "IGVFFI8777MXXY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:45:19.282604+00:00",
"file_format": "fastq",
"file_size": 15460536,
"href": "/sequence-files/IGVFFI8777MXXY/@@download/IGVFFI8777MXXY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/36293d81-8e19-40c1-9c50-6708c0f22dfa/IGVFFI8777MXXY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_S471_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9241FNZY/",
"accession": "IGVFFI9241FNZY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:32:54.393303+00:00",
"file_format": "fastq",
"file_size": 16412924,
"href": "/sequence-files/IGVFFI9241FNZY/@@download/IGVFFI9241FNZY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9f529f4d-2158-46a4-8d75-3bde727a1192/IGVFFI9241FNZY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_S464_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3503BPKN/",
"accession": "IGVFFI3503BPKN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:38:07.242048+00:00",
"file_format": "fastq",
"file_size": 14953677,
"href": "/sequence-files/IGVFFI3503BPKN/@@download/IGVFFI3503BPKN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2df994b7-6178-4de5-a0b1-e4db05681205/IGVFFI3503BPKN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_S467_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0019XPES/",
"accession": "IGVFFI0019XPES",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:47:10.740995+00:00",
"file_format": "fastq",
"file_size": 15289116,
"href": "/sequence-files/IGVFFI0019XPES/@@download/IGVFFI0019XPES.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/93f024ee-e47a-41ef-a5cc-5a62048e62c0/IGVFFI0019XPES.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_S472_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0576ECSI/",
"accession": "IGVFFI0576ECSI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:51:12.875628+00:00",
"file_format": "fastq",
"file_size": 15015391,
"href": "/sequence-files/IGVFFI0576ECSI/@@download/IGVFFI0576ECSI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/175340be-ee77-4952-879a-bfc7280f7d4e/IGVFFI0576ECSI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_S474_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8033WMRT/",
"accession": "IGVFFI8033WMRT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:36:03.347559+00:00",
"file_format": "fastq",
"file_size": 5526440,
"href": "/sequence-files/IGVFFI8033WMRT/@@download/IGVFFI8033WMRT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/cff77eab-2f3b-4d16-833f-674e9925ae00/IGVFFI8033WMRT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_S471_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5873SDKS/",
"accession": "IGVFFI5873SDKS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:43:23.616142+00:00",
"file_format": "fastq",
"file_size": 16362536,
"href": "/sequence-files/IGVFFI5873SDKS/@@download/IGVFFI5873SDKS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0e6636de-ef2e-47f4-a614-feffb6d95485/IGVFFI5873SDKS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_S470_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9724EAAQ/",
"accession": "IGVFFI9724EAAQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:34:53.984712+00:00",
"file_format": "fastq",
"file_size": 17379929,
"href": "/sequence-files/IGVFFI9724EAAQ/@@download/IGVFFI9724EAAQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9a529efb-79da-4312-9a00-519ff0b987ad/IGVFFI9724EAAQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_S465_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9492AZKJ/",
"accession": "IGVFFI9492AZKJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:31:29.674306+00:00",
"file_format": "fastq",
"file_size": 6336403,
"href": "/sequence-files/IGVFFI9492AZKJ/@@download/IGVFFI9492AZKJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1faf1993-67cd-4a44-8989-2913b3a9e441/IGVFFI9492AZKJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_S469_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2564NSJV/",
"accession": "IGVFFI2564NSJV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:38:22.413833+00:00",
"file_format": "fastq",
"file_size": 5848096,
"href": "/sequence-files/IGVFFI2564NSJV/@@download/IGVFFI2564NSJV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f979399e-2175-4571-8daf-81cc6e69ca7d/IGVFFI2564NSJV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_S472_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8009HURM/",
"accession": "IGVFFI8009HURM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:22:22.563192+00:00",
"file_format": "fastq",
"file_size": 6589597,
"href": "/sequence-files/IGVFFI8009HURM/@@download/IGVFFI8009HURM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ff80cf53-a5ee-4eeb-8c83-e672ecc4d010/IGVFFI8009HURM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_S465_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6909ADER/",
"accession": "IGVFFI6909ADER",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:26:59.404310+00:00",
"file_format": "fastq",
"file_size": 6222093,
"href": "/sequence-files/IGVFFI6909ADER/@@download/IGVFFI6909ADER.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d3b09921-d442-4da4-99c1-ff03574bea65/IGVFFI6909ADER.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_S467_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4092GCVZ/",
"accession": "IGVFFI4092GCVZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:42:45.534208+00:00",
"file_format": "fastq",
"file_size": 5180399,
"href": "/sequence-files/IGVFFI4092GCVZ/@@download/IGVFFI4092GCVZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/69d79b8d-d458-4081-81b1-77af51251dff/IGVFFI4092GCVZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_S474_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5700GLSH/",
"accession": "IGVFFI5700GLSH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:29:13.159538+00:00",
"file_format": "fastq",
"file_size": 6138693,
"href": "/sequence-files/IGVFFI5700GLSH/@@download/IGVFFI5700GLSH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d940840c-7544-41e4-8343-d85a0e1a141e/IGVFFI5700GLSH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_S468_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9956YVYV/",
"accession": "IGVFFI9956YVYV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:40:42.535183+00:00",
"file_format": "fastq",
"file_size": 5570433,
"href": "/sequence-files/IGVFFI9956YVYV/@@download/IGVFFI9956YVYV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/61d7567b-cead-434d-97e6-0fe9139c2dbc/IGVFFI9956YVYV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_S473_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3712MJHT/",
"accession": "IGVFFI3712MJHT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:24:38.866318+00:00",
"file_format": "fastq",
"file_size": 6829821,
"href": "/sequence-files/IGVFFI3712MJHT/@@download/IGVFFI3712MJHT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6e439a0b-25b7-453c-ab17-83623b09c4d2/IGVFFI3712MJHT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_S466_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6519RCQL/",
"accession": "IGVFFI6519RCQL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:33:39.030807+00:00",
"file_format": "fastq",
"file_size": 6344410,
"href": "/sequence-files/IGVFFI6519RCQL/@@download/IGVFFI6519RCQL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/4a28cd88-99e2-431e-b817-9878c5d1bdc0/IGVFFI6519RCQL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_S470_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2843CVQX/",
"accession": "IGVFFI2843CVQX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:16:36.459402+00:00",
"file_format": "fastq",
"file_size": 6611005,
"href": "/sequence-files/IGVFFI2843CVQX/@@download/IGVFFI2843CVQX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7ec07007-674f-403e-bbec-5d7d1edbc3bf/IGVFFI2843CVQX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_S463_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5396LVCV/",
"accession": "IGVFFI5396LVCV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:20:29.834632+00:00",
"file_format": "fastq",
"file_size": 5596451,
"href": "/sequence-files/IGVFFI5396LVCV/@@download/IGVFFI5396LVCV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7f8e9a50-dab9-4a55-b6a1-ffb9737b90e3/IGVFFI5396LVCV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep4_S466_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3451KSGC/",
"accession": "IGVFFI3451KSGC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:19:25.766922+00:00",
"file_format": "fastq",
"file_size": 6454402,
"href": "/sequence-files/IGVFFI3451KSGC/@@download/IGVFFI3451KSGC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e30df5d1-25a5-4837-a12f-5e37dc3415ff/IGVFFI3451KSGC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_S464_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2873DIIR/",
"accession": "IGVFFI2873DIIR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:15:04.457102+00:00",
"file_format": "fastq",
"file_size": 5721792,
"href": "/sequence-files/IGVFFI2873DIIR/@@download/IGVFFI2873DIIR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f5bdde1c-ecb3-4172-9f7e-ca0ef29f0a7a/IGVFFI2873DIIR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep2_S464_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9949DCGR/",
"accession": "IGVFFI9949DCGR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:22:48.864015+00:00",
"file_format": "fastq",
"file_size": 5148759,
"href": "/sequence-files/IGVFFI9949DCGR/@@download/IGVFFI9949DCGR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c420ca8e-da23-4e4e-944a-ecc259bbdc25/IGVFFI9949DCGR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep5_S467_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0464IKFP/",
"accession": "IGVFFI0464IKFP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:40:00.804949+00:00",
"file_format": "fastq",
"file_size": 5021591,
"href": "/sequence-files/IGVFFI0464IKFP/@@download/IGVFFI0464IKFP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/630fdda3-1828-4b14-8163-e3af1d800a8b/IGVFFI0464IKFP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep12_S474_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3201AANW/",
"accession": "IGVFFI3201AANW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:25:14.253948+00:00",
"file_format": "fastq",
"file_size": 5714018,
"href": "/sequence-files/IGVFFI3201AANW/@@download/IGVFFI3201AANW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f9d15834-2613-4703-94ae-53a9924a740f/IGVFFI3201AANW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep6_S468_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3189ONQJ/",
"accession": "IGVFFI3189ONQJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:30:10.830026+00:00",
"file_format": "fastq",
"file_size": 5510373,
"href": "/sequence-files/IGVFFI3189ONQJ/@@download/IGVFFI3189ONQJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/32bc816e-32d1-4e06-b002-690e1c6fc418/IGVFFI3189ONQJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep8_S470_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7767YDDR/",
"accession": "IGVFFI7767YDDR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:12:12.249421+00:00",
"file_format": "fastq",
"file_size": 5848505,
"href": "/sequence-files/IGVFFI7767YDDR/@@download/IGVFFI7767YDDR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3de41701-5289-45a3-9a85-d472348f8d8b/IGVFFI7767YDDR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep1_S463_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3962IEJM/",
"accession": "IGVFFI3962IEJM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:32:36.475193+00:00",
"file_format": "fastq",
"file_size": 5317438,
"href": "/sequence-files/IGVFFI3962IEJM/@@download/IGVFFI3962IEJM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/19c4da96-2fd6-4081-a635-9f395fb5f66b/IGVFFI3962IEJM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep9_S471_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6761LLIA/",
"accession": "IGVFFI6761LLIA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:35:05.425005+00:00",
"file_format": "fastq",
"file_size": 5221889,
"href": "/sequence-files/IGVFFI6761LLIA/@@download/IGVFFI6761LLIA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/89fe1c6a-57fe-474c-9344-5d3af8e66bdc/IGVFFI6761LLIA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep10_S472_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3435YJPI/",
"accession": "IGVFFI3435YJPI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:27:38.211550+00:00",
"file_format": "fastq",
"file_size": 5737050,
"href": "/sequence-files/IGVFFI3435YJPI/@@download/IGVFFI3435YJPI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3db76e43-9464-4643-8fc6-8bd004099243/IGVFFI3435YJPI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep7_S469_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9435OMZV/",
"accession": "IGVFFI9435OMZV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:37:35.901961+00:00",
"file_format": "fastq",
"file_size": 5320122,
"href": "/sequence-files/IGVFFI9435OMZV/@@download/IGVFFI9435OMZV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f78b6a7e-52c5-41dc-9a95-6f75cbc0f1d8/IGVFFI9435OMZV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep11_S473_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6700IZYS/",
"accession": "IGVFFI6700IZYS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:18:04.243493+00:00",
"file_format": "fastq",
"file_size": 5990704,
"href": "/sequence-files/IGVFFI6700IZYS/@@download/IGVFFI6700IZYS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/4fe035ca-cf77-415e-8591-955921bfabd0/IGVFFI6700IZYS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep2-BinA-PCRrep3_S465_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4833ZRTZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7478MTAF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7478MTAF",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep2-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS4955GEYO/",
"accession": "IGVFDS4955GEYO",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "preview",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-26T06:25:15.129639+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "570f7eb3-724c-4cae-9ded-d4932102dbf2"
}