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IGVFDS1302XQWQ
IGVFDS1302XQWQ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP002_G8_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0873IIME
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
1
836 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0950SNIN
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
2
7.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1055PSXF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
3
7.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1280VSTH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
4
3.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1973KSZY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
1
3.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2554QPOS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
2
3.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2679BHZY
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
3
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3070ATZK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
3
3.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3144YSXJ
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
4
7.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4145DDMX
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
2
881 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7029TFEQ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
IGVFDO8451NMBP
igvf:corces_donor_BANN1756
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2890YOZM
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP002_G8_ATAC
Ryan Corces, Gladstone Institute UCSF