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INDEXED
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MeasurementSet
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IGVFDS1277OGTW
IGVFDS1277OGTW
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X030_G7_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3270DSAM
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
HV7VHDSX5
3
12 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3476OQTO
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
HV7VHDSX5
3
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4148ZOYY
fastq
reads
I1
1
Illumina NovaSeq 6000
HV7VHDSX5
3
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7899XUFD
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
HV7VHDSX5
3
3.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0722WVNE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0180JQCL
igvf:corces_donor_BANN1344
female
Homo sapiens
IGVFDO1193ADXF
igvf:corces_donor_BANN1584
male
Homo sapiens
IGVFDO2031ESZX
igvf:corces_donor_BANN1037
female
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3628ZBBZ
igvf:corces_donor_BANN0348
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO5949WFOO
igvf:corces_donor_BANN1957
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9206CEMZ
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X030_G7_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF