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INDEXED
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MeasurementSet
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IGVFDS1273KOYU
IGVFDS1273KOYU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP025_G2_ATAC
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0323ACLC
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19RTCA4LE
3
20 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2181AZOP
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19RTCA4LE
2
20 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3421CTWP
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19RTCA4LE
3
19 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4513GJBX
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19RTCA4LE
2
4.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4958QLGL
fastq
reads
I1
1
Illumina NovaSeq X
19RTCA4LE
2
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5039JMIX
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19RTCA4LE
3
4.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7570YNQC
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19RTCA4LE
2
19 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7608JHKD
fastq
reads
I1
1
Illumina NovaSeq X
19RTCA4LE
3
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0036UTPF
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples
Donors
10 items
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6420MGXZ
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP025_G2_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF