{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1267CSNQ",
"aliases": [
"bradley-bernstein:scRNA Lib 8",
"buenrostro-bernstein:scRNA Lib 8"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9492RXJB](/primary-cells/IGVFSM9492RXJB/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9492RXJB/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1267CSNQ](/measurement-sets/IGVFDS1267CSNQ/) has sequence file(s): [IGVFFI6429NFVF](/sequence-files/IGVFFI6429NFVF/), [IGVFFI7238WNBP](/sequence-files/IGVFFI7238WNBP/), [IGVFFI0180GVJM](/sequence-files/IGVFFI0180GVJM/), [IGVFFI2134WMTY](/sequence-files/IGVFFI2134WMTY/), [IGVFFI9940JFCB](/sequence-files/IGVFFI9940JFCB/), [IGVFFI2645ZOLQ](/sequence-files/IGVFFI2645ZOLQ/), [IGVFFI5008DLXK](/sequence-files/IGVFFI5008DLXK/), [IGVFFI2323SIBZ](/sequence-files/IGVFFI2323SIBZ/), [IGVFFI3287CKBE](/sequence-files/IGVFFI3287CKBE/), [IGVFFI2197LHNX](/sequence-files/IGVFFI2197LHNX/), [IGVFFI1096ODCM](/sequence-files/IGVFFI1096ODCM/), [IGVFFI3655TUEL](/sequence-files/IGVFFI3655TUEL/), [IGVFFI2895BMRV](/sequence-files/IGVFFI2895BMRV/), [IGVFFI0705JIXK](/sequence-files/IGVFFI0705JIXK/), [IGVFFI2477AHZQ](/sequence-files/IGVFFI2477AHZQ/), [IGVFFI3665KBZW](/sequence-files/IGVFFI3665KBZW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1267CSNQ/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1267CSNQ](/measurement-sets/IGVFDS1267CSNQ/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1267CSNQ/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4564_SS-PKR 2",
"buenrostro-bernstein:BioSam 4564_SS-PKR 2"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:16.999627+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "c4d3ff5d-4949-4108-b03e-6e4bb0e0184a"
}