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IGVFDS1256KMVV

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples
Protocols
Aliases
igvf:corces_measurementSet_X051_G1_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R3
1
Read 2
19RTCA4LE
2
9.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19RTCA4LE
3
9.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19RTCA4LE
3
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19RTCA4LE
3
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19RTCA4LE
3
9.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19RTCA4LE
2
9.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19RTCA4LE
2
2.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19RTCA4LE
2
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples

Donors

10 items
Aliases
  • igvf:corces_donor_BANN0218
male
Homo sapiens
  • igvf:corces_donor_BANN0215
female
Homo sapiens
  • igvf:corces_donor_BANN1827
male
Homo sapiens
  • igvf:corces_donor_BANN1412
male
Homo sapiens
  • igvf:corces_donor_BANN0217
female
Homo sapiens
  • igvf:corces_donor_BANN0325
male
Homo sapiens
  • igvf:corces_donor_BANN0129
male
Homo sapiens
  • igvf:corces_donor_BANN1839
female
Homo sapiens
  • igvf:corces_donor_BANN1872
female
Homo sapiens
  • igvf:corces_donor_BANN1921
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X051_G1_RNA
Ryan Corces, Gladstone Institute UCSF