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MeasurementSet
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IGVFDS1252CYKZ
IGVFDS1252CYKZ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP019_G1_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1074YLQO
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1744VXNU
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2482HKUV
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2510EPTV
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
6
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3314RVLG
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
8
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3384MUSZ
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
6
447 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3545MCCH
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
5
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4414CSFH
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
7
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4692TGHT
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4780XBYA
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
7
450 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4069BQTG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0182KXUM
igvf:corces_donor_BANN9938
female
Homo sapiens
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1627RQLG
igvf:corces_donor_BANN1170
male
Homo sapiens
IGVFDO2031ESZX
igvf:corces_donor_BANN1037
female
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO3501RYHX
igvf:corces_donor_BANN1959
male
Homo sapiens
IGVFDO4170HAEN
igvf:corces_donor_BANN1864
male
Homo sapiens
IGVFDO5718REZU
igvf:corces_donor_BANN9926
female
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4002VSZF
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP019_G1_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF