{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1138LJOC",
"aliases": [
"bradley-bernstein:scATAC Lib 4",
"buenrostro-bernstein:scATAC Lib 4"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM2774PKYK](/primary-cells/IGVFSM2774PKYK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM2774PKYK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1138LJOC](/measurement-sets/IGVFDS1138LJOC/) has sequence file(s): [IGVFFI4880QUSX](/sequence-files/IGVFFI4880QUSX/), [IGVFFI9630KYEJ](/sequence-files/IGVFFI9630KYEJ/), [IGVFFI2917WNFA](/sequence-files/IGVFFI2917WNFA/), [IGVFFI4540HDTI](/sequence-files/IGVFFI4540HDTI/), [IGVFFI3468TNXK](/sequence-files/IGVFFI3468TNXK/), [IGVFFI4548DLSV](/sequence-files/IGVFFI4548DLSV/), [IGVFFI9116BOEI](/sequence-files/IGVFFI9116BOEI/), [IGVFFI7103MYZE](/sequence-files/IGVFFI7103MYZE/), [IGVFFI0971TENT](/sequence-files/IGVFFI0971TENT/), [IGVFFI0931MOCH](/sequence-files/IGVFFI0931MOCH/), [IGVFFI7646AZKM](/sequence-files/IGVFFI7646AZKM/), [IGVFFI3785YRCJ](/sequence-files/IGVFFI3785YRCJ/), [IGVFFI1849EKGB](/sequence-files/IGVFFI1849EKGB/), [IGVFFI3833KQNM](/sequence-files/IGVFFI3833KQNM/), [IGVFFI0228VZDB](/sequence-files/IGVFFI0228VZDB/), [IGVFFI9107NKVD](/sequence-files/IGVFFI9107NKVD/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1138LJOC/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS1138LJOC](/measurement-sets/IGVFDS1138LJOC/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS1138LJOC/"
}
]
},
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},
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},
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"accession": "IGVFSM2774PKYK",
"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 1",
"buenrostro-bernstein:BioSam 4566_SS-PKR 1"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:35:44.842241+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "d3b76e34-fe91-4263-b87c-317b00049dba"
}