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IGVFDS1130NULC

released
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Description
Colitis_recovered DSS16-DSS-m1,DSS16-DSS-m2; Control DSS16-Control-m3
Assay Term
single-cell RNA sequencing assay
Sample Summaries
  • Mus musculus C57BL/6J colon cell
Protocols
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set22
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
I1
4
Barcode index
1.5 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
4
Read 1
3.7 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
4
Read 2
4.1 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Donors

3 items
Aliases
  • buenrostro-bernstein:surya-DSS16-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS16-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS16-DSS-m2
unspecified
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
Jason Buenrostro, Broad

Related Multiome Datasets

3 items
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set9
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set10
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set21
Jason Buenrostro, Broad