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IGVFDS1125HXCL

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf16_10x2

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R2
1
Barcode index
22NC7YLT3
8
3.9 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22NC7YLT3
6
7.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
22NC7YLT3
7
4.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NC7YLT3
6
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NC7YLT3
7
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
22NC7YLT3
8
7.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
22NC7YLT3
7
7.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
22NC7YLT3
5
4.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22NC7YLT3
5
7.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22NC7YLT3
8
7.0 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Donors

44 items
Aliases
  • ansuman-satpathy:donor_of_KOLF2.2J
  • igvf:donor_KOLF2.2J
male
Homo sapiens
  • ansuman-satpathy:donor_of_PENN020i-588-6
  • igvf:donor_PENN0201-588-6
female
Homo sapiens
  • ansuman-satpathy:donor_of_GM01652
  • igvf:donor_GM01652
female
Homo sapiens
  • ansuman-satpathy:donor_of_C004
  • igvf:donor_C004
female
Homo sapiens
  • ansuman-satpathy:donor_of_Hues6
  • igvf:donor_Hues6
female
Homo sapiens
  • ansuman-satpathy:donor_of_WA13
  • igvf:donor_WA13
male
Homo sapiens
  • ansuman-satpathy:donor_of_PENN086i-278-1
  • igvf:donor_PENN086i-278-1
male
Homo sapiens
  • ansuman-satpathy:donor_of_C003
  • igvf:donor_C003
male
Homo sapiens
  • ansuman-satpathy:donor_of_A007
  • igvf:donor_A007
female
Homo sapiens
  • ansuman-satpathy:donor_of_B004
  • igvf:donor_B004
female
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf16_analysis_set_10x2
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf16_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf16_10x2
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford