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INDEXED
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MeasurementSet
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IGVFDS1011YMSG
IGVFDS1011YMSG
released
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Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C29_day5
Attribution
Chongyuan Luo, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0115RERY
fastq
reads
R1
1
Illumina NovaSeq X
7
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI1237BPDO
fastq
reads
R2
1
Illumina NovaSeq X
6
3.4 GB
Chongyuan Luo, UCLA
validated
IGVFFI1447DBLJ
fastq
reads
R2
1
Illumina NovaSeq X
4
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI2466SOLZ
fastq
reads
R2
1
Illumina NovaSeq X
3
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI2646NOSA
fastq
reads
R2
1
Illumina NovaSeq X
5
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI3301GYAT
fastq
reads
R1
1
Illumina NovaSeq X
4
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI3769YALW
fastq
reads
R1
1
Illumina NovaSeq X
6
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI4135YTZB
fastq
reads
R2
1
Illumina NovaSeq X
7
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI5405CNYC
fastq
reads
R1
1
Illumina NovaSeq X
3
3.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI5836QZYR
fastq
reads
R2
1
Illumina NovaSeq X
1
3.2 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2376KHRW
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3754NCBP
chongyuan-luo:C29
unspecified
Homo sapiens