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IGVFDS0935XBYS

released
File Set Type
experimental data
Summary
scATAC-seq
Assay Term
single-cell ATAC-seq
Sample Summaries
  • mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
Protocols
Aliases
jay-shendure:scATAC_mEBs_rep2_10XlaneB_reads
Publications

Sequencing Results (Illumina)

8 items
fastq
reads
R2
1
H3JK7BGXG
1
3.5 GB
Jay Shendure, UW
validated
fastq
reads
I1
1
H3JK7BGXG
1
782 MB
Jay Shendure, UW
validated
fastq
reads
I2
2
H3HFJBGXG
1
1.9 GB
Jay Shendure, UW
validated
fastq
reads
R1
2
H3HFJBGXG
1
3.6 GB
Jay Shendure, UW
validated
fastq
reads
I1
2
H3HFJBGXG
1
828 MB
Jay Shendure, UW
validated
fastq
reads
I2
1
H3JK7BGXG
1
1.7 GB
Jay Shendure, UW
validated
fastq
reads
R2
2
H3HFJBGXG
1
3.7 GB
Jay Shendure, UW
validated
fastq
reads
R1
1
H3JK7BGXG
1
3.4 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
scATAC-seq: fragments, peaks, signal, sparse peak count matrix
  • jay-shendure:analysis_set_scATAC_mEBs
Jay Shendure, UW

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW