{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0934SYRQ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0934SYRQ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0934SYRQ](/measurement-sets/IGVFDS0934SYRQ/) has sequence file(s) [IGVFFI6739SQTK](/sequence-files/IGVFFI6739SQTK/), [IGVFFI0286TBHI](/sequence-files/IGVFFI0286TBHI/), [IGVFFI0574EAGF](/sequence-files/IGVFFI0574EAGF/), [IGVFFI3563PTOE](/sequence-files/IGVFFI3563PTOE/), [IGVFFI2679KRUC](/sequence-files/IGVFFI2679KRUC/), [IGVFFI4558IXGW](/sequence-files/IGVFFI4558IXGW/), [IGVFFI0791CPNC](/sequence-files/IGVFFI0791CPNC/), [IGVFFI2557NBLU](/sequence-files/IGVFFI2557NBLU/), [IGVFFI6943HUNA](/sequence-files/IGVFFI6943HUNA/), [IGVFFI3723KXEY](/sequence-files/IGVFFI3723KXEY/), [IGVFFI6755EXPU](/sequence-files/IGVFFI6755EXPU/), [IGVFFI0170IIJR](/sequence-files/IGVFFI0170IIJR/), [IGVFFI9883GWFX](/sequence-files/IGVFFI9883GWFX/), [IGVFFI8650UVHT](/sequence-files/IGVFFI8650UVHT/), [IGVFFI9502TRDQ](/sequence-files/IGVFFI9502TRDQ/), [IGVFFI4454MJUH](/sequence-files/IGVFFI4454MJUH/), [IGVFFI0860GIXW](/sequence-files/IGVFFI0860GIXW/), [IGVFFI4597JJEN](/sequence-files/IGVFFI4597JJEN/), [IGVFFI9533KEOA](/sequence-files/IGVFFI9533KEOA/), [IGVFFI9311LLRP](/sequence-files/IGVFFI9311LLRP/), [IGVFFI3098AJAP](/sequence-files/IGVFFI3098AJAP/), [IGVFFI8577IGPG](/sequence-files/IGVFFI8577IGPG/), [IGVFFI6256ANPJ](/sequence-files/IGVFFI6256ANPJ/), [IGVFFI3903MZBT](/sequence-files/IGVFFI3903MZBT/), [IGVFFI9452RFBC](/sequence-files/IGVFFI9452RFBC/), [IGVFFI9105DOIH](/sequence-files/IGVFFI9105DOIH/), [IGVFFI3113CFJM](/sequence-files/IGVFFI3113CFJM/), [IGVFFI9464KGND](/sequence-files/IGVFFI9464KGND/), [IGVFFI7100QPVK](/sequence-files/IGVFFI7100QPVK/), [IGVFFI9145JWRO](/sequence-files/IGVFFI9145JWRO/), [IGVFFI2143FXJB](/sequence-files/IGVFFI2143FXJB/), [IGVFFI5003UCQS](/sequence-files/IGVFFI5003UCQS/), [IGVFFI1929ZUTI](/sequence-files/IGVFFI1929ZUTI/), [IGVFFI0100YQYA](/sequence-files/IGVFFI0100YQYA/), [IGVFFI2032BGYI](/sequence-files/IGVFFI2032BGYI/), [IGVFFI4508NSLN](/sequence-files/IGVFFI4508NSLN/), [IGVFFI5287VSRE](/sequence-files/IGVFFI5287VSRE/), [IGVFFI7367KTLU](/sequence-files/IGVFFI7367KTLU/), [IGVFFI8126JGXQ](/sequence-files/IGVFFI8126JGXQ/), [IGVFFI5037ULUU](/sequence-files/IGVFFI5037ULUU/), [IGVFFI6158MJIN](/sequence-files/IGVFFI6158MJIN/), [IGVFFI8544WVQG](/sequence-files/IGVFFI8544WVQG/), [IGVFFI0315TLGN](/sequence-files/IGVFFI0315TLGN/), [IGVFFI1044WEIN](/sequence-files/IGVFFI1044WEIN/), [IGVFFI0076FIBX](/sequence-files/IGVFFI0076FIBX/), [IGVFFI9558AYHA](/sequence-files/IGVFFI9558AYHA/), [IGVFFI2762JLDW](/sequence-files/IGVFFI2762JLDW/), [IGVFFI4823HGER](/sequence-files/IGVFFI4823HGER/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0934SYRQ/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0934SYRQ](/measurement-sets/IGVFDS0934SYRQ/) has sequence file(s): [IGVFFI6739SQTK](/sequence-files/IGVFFI6739SQTK/), [IGVFFI0286TBHI](/sequence-files/IGVFFI0286TBHI/), [IGVFFI0574EAGF](/sequence-files/IGVFFI0574EAGF/), [IGVFFI3563PTOE](/sequence-files/IGVFFI3563PTOE/), [IGVFFI2679KRUC](/sequence-files/IGVFFI2679KRUC/), [IGVFFI4558IXGW](/sequence-files/IGVFFI4558IXGW/), [IGVFFI0791CPNC](/sequence-files/IGVFFI0791CPNC/), [IGVFFI2557NBLU](/sequence-files/IGVFFI2557NBLU/), [IGVFFI6943HUNA](/sequence-files/IGVFFI6943HUNA/), [IGVFFI3723KXEY](/sequence-files/IGVFFI3723KXEY/), [IGVFFI6755EXPU](/sequence-files/IGVFFI6755EXPU/), [IGVFFI0170IIJR](/sequence-files/IGVFFI0170IIJR/), [IGVFFI9883GWFX](/sequence-files/IGVFFI9883GWFX/), [IGVFFI8650UVHT](/sequence-files/IGVFFI8650UVHT/), [IGVFFI9502TRDQ](/sequence-files/IGVFFI9502TRDQ/), [IGVFFI4454MJUH](/sequence-files/IGVFFI4454MJUH/), [IGVFFI0860GIXW](/sequence-files/IGVFFI0860GIXW/), [IGVFFI4597JJEN](/sequence-files/IGVFFI4597JJEN/), [IGVFFI9533KEOA](/sequence-files/IGVFFI9533KEOA/), [IGVFFI9311LLRP](/sequence-files/IGVFFI9311LLRP/), [IGVFFI3098AJAP](/sequence-files/IGVFFI3098AJAP/), [IGVFFI8577IGPG](/sequence-files/IGVFFI8577IGPG/), [IGVFFI6256ANPJ](/sequence-files/IGVFFI6256ANPJ/), [IGVFFI3903MZBT](/sequence-files/IGVFFI3903MZBT/), [IGVFFI9452RFBC](/sequence-files/IGVFFI9452RFBC/), [IGVFFI9105DOIH](/sequence-files/IGVFFI9105DOIH/), [IGVFFI3113CFJM](/sequence-files/IGVFFI3113CFJM/), [IGVFFI9464KGND](/sequence-files/IGVFFI9464KGND/), [IGVFFI7100QPVK](/sequence-files/IGVFFI7100QPVK/), [IGVFFI9145JWRO](/sequence-files/IGVFFI9145JWRO/), [IGVFFI2143FXJB](/sequence-files/IGVFFI2143FXJB/), [IGVFFI5003UCQS](/sequence-files/IGVFFI5003UCQS/), [IGVFFI1929ZUTI](/sequence-files/IGVFFI1929ZUTI/), [IGVFFI0100YQYA](/sequence-files/IGVFFI0100YQYA/), [IGVFFI2032BGYI](/sequence-files/IGVFFI2032BGYI/), [IGVFFI4508NSLN](/sequence-files/IGVFFI4508NSLN/), [IGVFFI5287VSRE](/sequence-files/IGVFFI5287VSRE/), [IGVFFI7367KTLU](/sequence-files/IGVFFI7367KTLU/), [IGVFFI8126JGXQ](/sequence-files/IGVFFI8126JGXQ/), [IGVFFI5037ULUU](/sequence-files/IGVFFI5037ULUU/), [IGVFFI6158MJIN](/sequence-files/IGVFFI6158MJIN/), [IGVFFI8544WVQG](/sequence-files/IGVFFI8544WVQG/), [IGVFFI0315TLGN](/sequence-files/IGVFFI0315TLGN/), [IGVFFI1044WEIN](/sequence-files/IGVFFI1044WEIN/), [IGVFFI0076FIBX](/sequence-files/IGVFFI0076FIBX/), [IGVFFI9558AYHA](/sequence-files/IGVFFI9558AYHA/), [IGVFFI2762JLDW](/sequence-files/IGVFFI2762JLDW/), [IGVFFI4823HGER](/sequence-files/IGVFFI4823HGER/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0934SYRQ/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1176SLYJ](/in-vitro-systems/IGVFSM1176SLYJ/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1176SLYJ/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0934SYRQ](/measurement-sets/IGVFDS0934SYRQ/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0934SYRQ/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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}
],
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"creation_timestamp": "2023-12-13T08:48:09.888597+00:00",
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "5d35da39-bc37-42ed-9aba-28ac4f2b6e43"
}