{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0909ARVL/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0909ARVL",
"aliases": [
"jesse-engreitz:measurement_set-scRNAseq_2kG_2PMDox2_7"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003660/",
"status": "released",
"term_name": "in vitro CRISPR screen using single-cell RNA-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000753/"
},
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS8509JBZW](/auxiliary-sets/IGVFDS8509JBZW/) has sequence file(s): [IGVFFI4169AJLD](/sequence-files/IGVFFI4169AJLD/), [IGVFFI8014NHMB](/sequence-files/IGVFFI8014NHMB/), [IGVFFI3861DNWW](/sequence-files/IGVFFI3861DNWW/), [IGVFFI3085EGKA](/sequence-files/IGVFFI3085EGKA/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS8509JBZW/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0909ARVL](/measurement-sets/IGVFDS0909ARVL/) has sequence file(s): [IGVFFI2623DFPH](/sequence-files/IGVFFI2623DFPH/), [IGVFFI8455QHPL](/sequence-files/IGVFFI8455QHPL/), [IGVFFI4524TIDC](/sequence-files/IGVFFI4524TIDC/), [IGVFFI9389VVFX](/sequence-files/IGVFFI9389VVFX/), [IGVFFI7762ZCFY](/sequence-files/IGVFFI7762ZCFY/), [IGVFFI9552QVSP](/sequence-files/IGVFFI9552QVSP/), [IGVFFI9746PGFG](/sequence-files/IGVFFI9746PGFG/), [IGVFFI9556NUCM](/sequence-files/IGVFFI9556NUCM/), [IGVFFI5528WSJT](/sequence-files/IGVFFI5528WSJT/), [IGVFFI5609NSJU](/sequence-files/IGVFFI5609NSJU/), [IGVFFI0325BBYL](/sequence-files/IGVFFI0325BBYL/), [IGVFFI3636CWCB](/sequence-files/IGVFFI3636CWCB/), [IGVFFI7098GUKF](/sequence-files/IGVFFI7098GUKF/), [IGVFFI2167SVSB](/sequence-files/IGVFFI2167SVSB/), [IGVFFI2059EHSR](/sequence-files/IGVFFI2059EHSR/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0909ARVL/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS8509JBZW/",
"accession": "IGVFDS8509JBZW",
"aliases": [
"jesse-engreitz:auxiliary_sets-scRNAseq_2kG_2PMDox2_7"
],
"file_set_type": "gRNA sequencing",
"status": "preview"
}
],
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [],
"creation_timestamp": "2024-01-18T03:10:07.339699+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"aliases": [
"igvf:donor_of_teloHAEC"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI2623DFPH/",
"accession": "IGVFFI2623DFPH",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox2_7_S1_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:55:21.156804+00:00",
"file_format": "fastq",
"file_size": 2503068730,
"href": "/sequence-files/IGVFFI2623DFPH/@@download/IGVFFI2623DFPH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/b81ec0c8-0ee2-42bf-bf45-ccbb2a9e5825/IGVFFI2623DFPH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox2_7_S1_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8455QHPL/",
"accession": "IGVFFI8455QHPL",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox2_7_S1_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:54:04.861149+00:00",
"file_format": "fastq",
"file_size": 8578835835,
"href": "/sequence-files/IGVFFI8455QHPL/@@download/IGVFFI8455QHPL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/56c1755b-6715-456f-9697-9e39369490f5/IGVFFI8455QHPL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox2_7_S1_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4524TIDC/",
"accession": "IGVFFI4524TIDC",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox2_7_S1_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:52:19.814230+00:00",
"file_format": "fastq",
"file_size": 11715380013,
"href": "/sequence-files/IGVFFI4524TIDC/@@download/IGVFFI4524TIDC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/4abf71d2-e41d-46da-943e-adb309d3abd9/IGVFFI4524TIDC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox2_7_S1_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9389VVFX/",
"accession": "IGVFFI9389VVFX",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_c_CCACAGGG_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:49:43.446829+00:00",
"file_format": "fastq",
"file_size": 5343879360,
"href": "/sequence-files/IGVFFI9389VVFX/@@download/IGVFFI9389VVFX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/20454da7-2431-477d-9bd3-db6794cdfd8b/IGVFFI9389VVFX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_c_CCACAGGG_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7762ZCFY/",
"accession": "IGVFFI7762ZCFY",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_d_GGCGTTAT_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:52:06.040723+00:00",
"file_format": "fastq",
"file_size": 1265390292,
"href": "/sequence-files/IGVFFI7762ZCFY/@@download/IGVFFI7762ZCFY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/1656a51d-5e24-4d9f-94e8-efe36ef98785/IGVFFI7762ZCFY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_d_GGCGTTAT_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9552QVSP/",
"accession": "IGVFFI9552QVSP",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_c_CCACAGGG_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:48:54.922256+00:00",
"file_format": "fastq",
"file_size": 1038147009,
"href": "/sequence-files/IGVFFI9552QVSP/@@download/IGVFFI9552QVSP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/1127dd79-4e6d-4397-98c4-2864dfd87ae0/IGVFFI9552QVSP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_c_CCACAGGG_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9746PGFG/",
"accession": "IGVFFI9746PGFG",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_c_CCACAGGG_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:49:07.640176+00:00",
"file_format": "fastq",
"file_size": 3808559065,
"href": "/sequence-files/IGVFFI9746PGFG/@@download/IGVFFI9746PGFG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/11ab74e6-84cb-4fec-837e-971c70e68868/IGVFFI9746PGFG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_c_CCACAGGG_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9556NUCM/",
"accession": "IGVFFI9556NUCM",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_a_ATTTGCTA_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:46:58.900982+00:00",
"file_format": "fastq",
"file_size": 1068999092,
"href": "/sequence-files/IGVFFI9556NUCM/@@download/IGVFFI9556NUCM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/91ddff3f-57ca-48f1-af05-2fce03066e19/IGVFFI9556NUCM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_a_ATTTGCTA_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5528WSJT/",
"accession": "IGVFFI5528WSJT",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_d_GGCGTTAT_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:51:11.533024+00:00",
"file_format": "fastq",
"file_size": 6026916806,
"href": "/sequence-files/IGVFFI5528WSJT/@@download/IGVFFI5528WSJT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/36056830-2503-4348-9fcf-b1384170d31c/IGVFFI5528WSJT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_d_GGCGTTAT_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5609NSJU/",
"accession": "IGVFFI5609NSJU",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_a_ATTTGCTA_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:45:24.840699+00:00",
"file_format": "fastq",
"file_size": 3850151491,
"href": "/sequence-files/IGVFFI5609NSJU/@@download/IGVFFI5609NSJU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/666ce4c8-0309-415a-a4d8-50ce277d62e9/IGVFFI5609NSJU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_a_ATTTGCTA_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0325BBYL/",
"accession": "IGVFFI0325BBYL",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_a_ATTTGCTA_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:46:08.686015+00:00",
"file_format": "fastq",
"file_size": 5419811632,
"href": "/sequence-files/IGVFFI0325BBYL/@@download/IGVFFI0325BBYL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/1f12ae99-d7a0-4980-b053-0df68bc3ac7f/IGVFFI0325BBYL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_a_ATTTGCTA_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3636CWCB/",
"accession": "IGVFFI3636CWCB",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_b_TAGACACC_L001_I1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:48:03.546359+00:00",
"file_format": "fastq",
"file_size": 1131021111,
"href": "/sequence-files/IGVFFI3636CWCB/@@download/IGVFFI3636CWCB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/138ba2d6-0fff-418d-a94b-5136f7c1cf03/IGVFFI3636CWCB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_b_TAGACACC_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7098GUKF/",
"accession": "IGVFFI7098GUKF",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_b_TAGACACC_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:48:17.325636+00:00",
"file_format": "fastq",
"file_size": 4043203068,
"href": "/sequence-files/IGVFFI7098GUKF/@@download/IGVFFI7098GUKF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/6e4bb711-5027-452b-b077-48e2791e94c7/IGVFFI7098GUKF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_b_TAGACACC_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2167SVSB/",
"accession": "IGVFFI2167SVSB",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_b_TAGACACC_L001_R2_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:47:12.062147+00:00",
"file_format": "fastq",
"file_size": 5693181625,
"href": "/sequence-files/IGVFFI2167SVSB/@@download/IGVFFI2167SVSB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/65d5f717-7793-443c-a134-b66ae9781255/IGVFFI2167SVSB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_b_TAGACACC_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2059EHSR/",
"accession": "IGVFFI2059EHSR",
"aliases": [
"jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox2_7_d_GGCGTTAT_L001_R1_001.fastq.gz"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-21T00:50:31.788100+00:00",
"file_format": "fastq",
"file_size": 4327552871,
"href": "/sequence-files/IGVFFI2059EHSR/@@download/IGVFFI2059EHSR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/21/4d47b941-c121-4474-83bd-e9cbb6572fce/IGVFFI2059EHSR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox2_7_d_GGCGTTAT_L001_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7943IIWZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 86015c12-b9a6-43ba-9601-5d75aab4d39c was removed from this measurement set.",
"preferred_assay_title": "Perturb-seq",
"protocols": [
"https://www.protocols.io/view/systematic-perturb-seq-to-discover-endothelial-cel-261ged73yv47/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9362CZWG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9362CZWG",
"aliases": [
"jesse-engreitz:in_vitro_systems-scRNAseq_2kG_2PMDox2_7"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS1298TUYG/",
"accession": "IGVFDS1298TUYG",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting genes in many genomic loci"
}
],
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
"modality": "interference",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "preview",
"summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/05fa0dc9-0e33-427c-9d1f-82393edc4a03/",
"title": "Helen Kang"
},
"submitted_files_timestamp": "2023-12-21T00:45:24.840699+00:00",
"summary": "CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci",
"uuid": "f26bab24-9488-47bf-931f-8c8ed7876447"
}